Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00368 AAGAAGGGGGGAAATTACAATTACTCTTCTAGTTCTATTATTAAAATGAATCCATTGCATCAGTAGCAAGAAATAGTGCTTCCAGTTCTGATGCTCGCTTCCGAGCTAAAAGTCTTCTTGAACAGCTCTATAAATTTCAAGCAAGCTACTCAAATTCATGCCCACATTCTCGTCAATGGGCTTCCAAATCTCGAGTCTTGCTTGGTCCGTCAAATCACTCGTTCTGAGTTCACTTGCGCCAGAATCGTATCCCTTTATCTCCAACAAATTCTTCACCATTCGCAAAACCCAGATGCGTTCACATGGGCCTGCGCCGTTCGATTCTTTTCCCAGAATGGCCAGTTCATGGAAGCAATCTCTCATTATGTTCAGATGCAGAGATTGGGACTGCATCCGGGCACTTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGTAGGATTATGTGTAAGTTTGGTGGAAGCTATGTTCACGCTCAGGTTTATAAGTTTGGGTTTTGTCGCTGTGTTTACGTGCAAACTGCCCTTGTCGATTTTTACTCAAAACTGGGTGATATGGGTTTTGCTCAGAAGGTGTTTGATGATATGACTGAGAAAAATGTGGTTTCGTGGAATTCAATCTTGTCTGGTTATGTGAAAATTGGGAACTTAGTTGACGCTCAGAAAGTGTTCGATGAAATGCCTCTGAAAGATGTCATATCTTGGAATTCCATGTTGACAGGATTCGCCAATTCTGGAAATATGGATCGAGCGTGGTGTTTATTTCAACAAATGGGGGAGAAAAGTTCGGCTTCTTGGAATGCAATGATCAGTGGCTACGTGAACTGTGGAGACATAAAGTCTGCTAGAAACCTGTTTGATGTAATGCCTAACAGAAATAATGTTTCGTGGATTACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTAATTCTGCTTATGAGCTCTTTGATAAGATGGGTGAGAAGGAGCTTCTCTCATTTAACGCAATGATTGCTTGCTATTCACAAAATAGTCTGCCTAACAAAGCATTGGAGTTATTCAACCAAATGCTTCAACCCGATGTGAACATCCAACCCGATGAGATGACTTTTGCTAGCATTATATCTGCTTGTACTCAGCTGGGAAATCTGAATTGTGGTACTTGGATTGAGTCGTATATGGAAAAACTTGGGATTGAGTTGGATGATCATTTGGCGACTGCATTAGTAGATCTATATGCAAAATCCGGGAACATTGAGAGGGCGTTTGAGCTGTTCAATGGTCTGAAAAAGAGGGATTTAATCGCTTATTCAGCTATGATCTTTGGATGTGGGATAAATGGTAAGATAGCGGCTCAAAATAGCTTGAAGTCGGTGACCGATACAACCGGATATCGGTCTCTTCTAGCCAACATTTACTCTTCTATGGAGAGGTGGGATGATGCTAAGAGGCTGAGAAAAGCCATGGGAAATAAAGTATTTGTCAAGATATCTGGGTGTAGTTGGATGGAGCAATCTGAAAGCTGA 1506 41.83 MLASELKVFLNSSINFKQATQIHAHILVNGLPNLESCLVRQITRSEFTCARIVSLYLQQILHHSQNPDAFTWACAVRFFSQNGQFMEAISHYVQMQRLGLHPGTFAVSSTLRACGRIMCKFGGSYVHAQVYKFGFCRCVYVQTALVDFYSKLGDMGFAQKVFDDMTEKNVVSWNSILSGYVKIGNLVDAQKVFDEMPLKDVISWNSMLTGFANSGNMDRAWCLFQQMGEKSSASWNAMISGYVNCGDIKSARNLFDVMPNRNNVSWITLIAGYSKLGEVNSAYELFDKMGEKELLSFNAMIACYSQNSLPNKALELFNQMLQPDVNIQPDEMTFASIISACTQLGNLNCGTWIESYMEKLGIELDDHLATALVDLYAKSGNIERAFELFNGLKKRDLIAYSAMIFGCGINGKIAAQNSLKSVTDTTGYRSLLANIYSSMERWDDAKRLRKAMGNKVFVKISGCSWMEQSES 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11754906 11757326 - XM_039018964.1 Bhi12g00368 52180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 370 397 IPR002885 -
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 296 321 IPR002885 -
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 264 291 IPR002885 -
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 171 197 IPR002885 -
Bhi12g00368 471 TIGRFAM PPR: pentatricopeptide repeat domain 202 229 IPR002885 -
Bhi12g00368 471 Gene3D Tetratricopeptide repeat domain 15 122 IPR011990 GO:0005515
Bhi12g00368 471 SUPERFAMILY TPR-like 68 289 IPR011990 GO:0005515
Bhi12g00368 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Bhi12g00368 471 Pfam E motif 425 467 IPR046848 -
Bhi12g00368 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Bhi12g00368 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Bhi12g00368 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 261 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat family 296 341 IPR002885 -
Bhi12g00368 471 PANTHER OS07G0578800 PROTEIN-RELATED 167 228 IPR045215 GO:0003723|GO:0009451
Bhi12g00368 471 PANTHER OS07G0578800 PROTEIN-RELATED 55 166 IPR045215 GO:0003723|GO:0009451
Bhi12g00368 471 PANTHER OS07G0578800 PROTEIN-RELATED 411 468 IPR045215 GO:0003723|GO:0009451
Bhi12g00368 471 PANTHER OS07G0578800 PROTEIN-RELATED 229 413 IPR045215 GO:0003723|GO:0009451
Bhi12g00368 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 143 170 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 234 261 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 202 230 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 264 292 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 171 199 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 370 396 IPR002885 -
Bhi12g00368 471 Pfam PPR repeat 71 100 IPR002885 -
Bhi12g00368 471 Gene3D Tetratricopeptide repeat domain 199 261 IPR011990 GO:0005515
Bhi12g00368 471 Gene3D Tetratricopeptide repeat domain 262 348 IPR011990 GO:0005515
Bhi12g00368 471 Gene3D Tetratricopeptide repeat domain 125 198 IPR011990 GO:0005515
Bhi12g00368 471 PANTHER OS08G0162200 PROTEIN 55 166 - -
Bhi12g00368 471 PANTHER OS08G0162200 PROTEIN 411 468 - -
Bhi12g00368 471 PANTHER OS08G0162200 PROTEIN 229 413 - -
Bhi12g00368 471 PANTHER OS08G0162200 PROTEIN 167 228 - -
Bhi12g00368 471 Gene3D Tetratricopeptide repeat domain 349 470 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00368 - - - bhj:120067396 954.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00368 Bhi-Chr12:11754906 Bhi01g02414 Bhi-Chr1:58682205 2.45E-75 dispersed
Bhi12g00367 Bhi-Chr12:11696462 Bhi12g00368 Bhi-Chr12:11754906 3.94E-10 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00368 Bhi_Chr12 FPKM 15.605108 15.373178 16.996647 16.839237 18.040867 18.799021 17.942852 30.316231 28.002539 26.49114