Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00406 TTTTTTTGTTTTTTTTTTTTTTGGTATTGTGAAAATAACTTTGTTTCAAAACTCATTATCATCAAAGAGAAAGGAAAAGAAAAGAAAAAGGCAGATCCAAGGAAGGTGGTTAATCTGTCAATCCCATCAATCAGTCAAACCCCAATCTAGATCGACTCCGACCAATCATCAATCAAAATTTTTTTTTTCATAAAAGTGAAGAATTACAATAATTTTTTTGGATATGTCATCTTCTTCATCTTCTTCTTCTTCACCTACTTCTACTACTACTACGACTACGTTATCTCAACAACATCTGCAGCAGCAGCAGCAGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGTAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGCGATGTGGACACTGCACTAATCTGTTGCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTCATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGACGAGCTCCCTAGGCCACCCGTTATCAATAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGTTTCATCAAGGACGAGATCCAACGAATCAAGTCTGTGAATCCCGATATATCCCATAGGGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGATAATGGATTCTATGCTTCAGCCAATGTTGGTGTCTCCCACTTCTGAGTCATTGGTGGGGTTATTATATCATATGGATATCTGTTTTTCTCTCTCAACTACCACCAAAATTCCTATCATCATTATTACTTACTTTTTAATCCCATCTACTACTACTACTAGTGCTCATGTGTTGATATATTAATTATATCTTAAATACTCTCTACTCCTAAGTTAGCTACCATGTAATTTCCCTTTTAATGTTATGTTGATTATGAACTAGCTACTATATATTTGGCTCACTACCACTACTACTTGATCAATGCATCTTAATTAGTGTGTTGTCATGACTA 1239 39.06 MSSSSSSSSSPTSTTTTTTLSQQHLQQQQQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13603558 13606650 - XM_039051060.1 Bhi12g00406 52218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00406 243 Pfam YABBY protein 41 204 IPR006780 GO:0007275
Bhi12g00406 243 PANTHER PROTEIN YABBY 6-RELATED 1 241 IPR006780 GO:0007275
Bhi12g00406 243 PANTHER AXIAL REGULATOR YABBY 3 1 241 - -
Bhi12g00406 243 SUPERFAMILY HMG-box 148 197 IPR036910 -
Bhi12g00406 243 MobiDBLite consensus disorder prediction 1 34 - -
Bhi12g00406 243 Gene3D High mobility group box domain 149 212 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01472 Bhi-Chr7:43206383 Bhi12g00406 Bhi-Chr12:13603558 3.62E-41 dispersed
Bhi07g01473 Bhi-Chr7:43206383 Bhi12g00406 Bhi-Chr12:13603558 2.75E-41 dispersed
Bhi10g00205 Bhi-Chr10:4368030 Bhi12g00406 Bhi-Chr12:13603558 5.26E-44 dispersed
Bhi10g00206 Bhi-Chr10:4368030 Bhi12g00406 Bhi-Chr12:13603558 7.42E-59 dispersed
Bhi12g00406 Bhi-Chr12:13603558 Bhi02g00976 Bhi-Chr2:21993237 1.31E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2591 PF04690 YABBY 1.70E-70 CL0114 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00406 K25796 - csv:101214748 437.573