Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00617 AATTAAATAGGAGAAAGCCATTCCAACGATCCAACCTCTTAAAACCCCAAGAAAAACCCTCGCTAGTCGGTACTTCTTCTGCAGAGCTATGGCAGCACAAAACACTCGAATCTATCCAAAGTTTGCTTAACCACCATTCATACTCTTCTTTAACTCGGCAAAATCGCCCCCCGAAATCCAAAAACCAGTGGCCGTTTCATCTCTCCGAAGTCCGAAGCTTTTGTGAACATCAACAAACGATTCTTGTTTTCATGCCCGCCATTGACAAAGCGAAGCAGAGGCTTCAAACTGGGTGGAAGAGGCACATGACCACAGTCTATGATTATAAGTGTTCTTTCAACCCCAATTTGAAATGTTGAGGGTGTCATCATCTTTTGGAACATGGAAGCACAATCGTTGGAAAGCTTGCTTGAAACTACTCCCCACTCTATGTAAAGGTTTACATACTGAAAACTCCAATATTATTTCTACCAATATTTGTATAAGTCGTCATGTAAGCAATGGTCATCTTGATCTTGCTTGGACTCTATTCAATGAAATGCCAGTAAGAAGTGTTGTCTCATGGAATATCATGATTTCTGGATACTCCAAATTAGGAAAGTATAGTGAAGCTCTCAATCTGGCTTCAGGGATGCATTGCAATAATGTAAAATTAAATGAGACGACCTTTTCTACTTTGTTGAGTATTTGTGCACGTTCAGGGTGTACATCTGAGGGAAAACAGTTTCATTGTTTGATTTTGAAATCTGGATTGCAGATATTTGAGCTTGTGGGAAGTGCATTGCTGTATTTGTATGCAAACATTAATGACATTAGTGGAGCTAAGCAAGTCTTTGATGAGTTGCATGATAAGAATGATTTATTATGGAGCTTGATGCTTGTGGGGTATGTGAAATGCAATTTGATGGATGATGCTTTTGTTCTATTTAAGAAATCTCCAACACGGGATGTGGTGGCGTGGACTACTTTGATATCAGGGTATGCAAGAAGTGAGCATAACTGCAAGAGGGCATTGGAATTATTCTGCTCCATGTGCATGAATGGTGAGGTTGAGCCTAATGAGTTCACTTTTGATTGTGTTGTGAGAGCTTGTGGGAGAATGAGAGATTTGAGTCGGGGGAAGGTTGTTCATGGGATTTTGACTAAATATGGATTCCACTTCGATCATTCAATTTGTAGTGCACTGATTTTATTTTACTGTCAGTGTGAGGCTATTGACACTGCTAAGGCAGTTTATGATAGTATGGAAAGACCGTGTCTAAATGATTCAAATTCTCTTCTAGAGGGGCTAATATCAGCAGGAAGAGTTTATGATGCTGAAGAAATTTTTTGTAAATTAAGAGAAAAAAATCCAGTTTCATACAATTTGATGCTTAAAGGGTATGCAATGAGTGGTAGACTTGAAGAATCAAAGAGATTATTTGAAAGAATGACTCATAAAACTATCATTTCATCAAACACTATGATATCTGTGTATTCCAGGAACGGTGAAATTGATAAAGCTTTCAAATTATTTGAGTCAATGAAGAGTGAAGGAGATCCTGTGACATGGAACTCAATGATATCAGGCTATATTCAAAATCATCAGCATGAAGAAGCTTTGAAACTCTATCTAATCATGTGCAGAACATCGGTTGAACGCTCTAGATCAACATTCTCTGCTCTGTTTCAAGCATGCACGTGCTTAGGATCTATTCAATTGGGTCAATCACTCCATGGCCATGCAATCAAGACAGCCTTTGATTCGAATGTTTATGTTGGAACATCACTCATAGATATGTACTCAAAATTTGGGAGCATCAGTGATGCTCAGACTACGTTTGCCAGTGTTTATTTCCCTAATGTGGCAGCTTTTACTGCTCTAATTAATGGATATGTGCATCATGGACTTGGGATTGAAGCATTCTCAGTCTTTGAGGAGATGTTGAAGCACAAAGTTCTGCCAAATGGAGCTACTCTTTTGGGTATTCTTTCTGCATGTAGTCGTGCTGGTATGGTAAATGAAGGAATGACAGTTTTCCATTCAATGGAACAATGTTATGGCGTGATTCCAACTTTAGAACACTATGCATGTGTGGTGGATCTTCTTGGTCAGTCGGGACGTCTGTATGAAGCTGAAGAATTTATTAGAAGCATGCCAATTGAAGCTGACAGGGTTATTTGGGGAGCTCTGTTAAATGCTTGTTGGTTTTGGATGGACTTGGAATTGGGTGAGAGTGTGGCTAAGAAGATGCTTAGTTTGGACCCAAAAGCAATATCTGCTTATGTTATACTGTCTAATATATATGCTAAATTAGGGATGTGGGTAGAGAAGATCAATGTGAGGAGGCAATTGAGGAGCTTAAAAGTGAAAAAGAATCGGGGTTGTAGCTGGATCAATGTAAATAATAAAACGCATGTATTCTCTGTAGAAGATAGGTCCCATCCTAACTGTAATGCAATTTATGCAACTTTAGAGCACCTATTAGCAAATGTAAACTCTATAGCACAATTTAACCATGTTCCCAAATCCATTTCGAAGGTTTGTTTTCCGAATTCAATATACTCCCTTTGACTGGCTCCCATGTTCATTCACCTCCAGAATTTGTGCAGCCCTTAATGTTTATTCATCTTGAAAACAGTCCTCATAGTGAAAGTATGAATGAGGTCCTTACTTCCCCTTTTGGAGTGCTTCGTCAATTCAATTGTACTAACACAGTTCAAAGGGTTTATGTTTTCTGTCTTATATTTATTCACTAGTCCCAACAAGAAAGCTCCCATACTGGAAATGGCAGTTGTAACTTGATTCTCAATGACGTTTATAGCTAAAGAGTTCTGGAAAAGGTGCAGATTGGCTTGACTGTAAAAACTGTTTTCGTTCGAGAAATTAGAGATTCTGCAGAGTCAGTCTACTACGAAACTGTCATATAATCTTGCTAAGGCCAATTTTGGGATTCTATGAGTGGAAGTTATATTTGCAGTGTGTCTATATATATATTTGAATTGGAAAATGTTTGGATGTTAACTAAAACTTGGTCTTTCAACTCGCATTCCAAAAACACTATGCCTTCCCTTCTCTAAGTCTTCGGTCTCCAAGTTAAATGCTTTCTCTTGTCTCCTCCAACTGTCTTGTTCAACTATTCTCTTCCTCCAGGCAGCTACTGTGAATAAAATGGTGAGTAGGCTGATTCCATTTAACATATCAATTTTAAAAGCTTGTCAACATTAACCTCCCAGACACTCTGAGACTGATGACAGAGTATATTTGTGTGCTTTGGGATTCTTTATCTATTGGCCAAAATCGAGGGTAATATGCTTCGTCTTACTCAAAGGTTGTAGAATGTTACTGTTTGTGAAGAGGTGCCTCCATTTGCAATGAGTTATTTGACATCCACTCTGAAGATACAAAGGACTACATATTTTCATTGTCATACACGATATTACACCCAAAGTTCCAAGGACCAAAACTAAATTTAAACTTGTAACGAGTAGCTCTAAACGTATAGGCCATTTGAAGTACTTTGTTTGGTTCATTTCATTCAATGAAATGTTTCTTTATCCAAAAAAGTACTTTTGGTTCATAGAGGAAGCACTCATCTAGAGAGAGGGTGATTGATTTTTTCTCTTGTAGTTCATTAAATTTAGGATGTATTTTGGAGTGGAATTTGATGTTCATTATTATTCTTTTC 3668 37.98 MLRVSSSFGTWKHNRWKACLKLLPTLCKGLHTENSNIISTNICISRHVSNGHLDLAWTLFNEMPVRSVVSWNIMISGYSKLGKYSEALNLASGMHCNNVKLNETTFSTLLSICARSGCTSEGKQFHCLILKSGLQIFELVGSALLYLYANINDISGAKQVFDELHDKNDLLWSLMLVGYVKCNLMDDAFVLFKKSPTRDVVAWTTLISGYARSEHNCKRALELFCSMCMNGEVEPNEFTFDCVVRACGRMRDLSRGKVVHGILTKYGFHFDHSICSALILFYCQCEAIDTAKAVYDSMERPCLNDSNSLLEGLISAGRVYDAEEIFCKLREKNPVSYNLMLKGYAMSGRLEESKRLFERMTHKTIISSNTMISVYSRNGEIDKAFKLFESMKSEGDPVTWNSMISGYIQNHQHEEALKLYLIMCRTSVERSRSTFSALFQACTCLGSIQLGQSLHGHAIKTAFDSNVYVGTSLIDMYSKFGSISDAQTTFASVYFPNVAAFTALINGYVHHGLGIEAFSVFEEMLKHKVLPNGATLLGILSACSRAGMVNEGMTVFHSMEQCYGVIPTLEHYACVVDLLGQSGRLYEAEEFIRSMPIEADRVIWGALLNACWFWMDLELGESVAKKMLSLDPKAISAYVILSNIYAKLGMWVEKINVRRQLRSLKVKKNRGCSWINVNNKTHVFSVEDRSHPNCNAIYATLEHLLANVNSIAQFNHVPKSISKVCFPNSIYSL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18905538 18911418 - XM_039018632.1 Bhi12g00617 52429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00617 733 Pfam E motif 616 676 IPR046848 -
Bhi12g00617 733 PANTHER - 34 194 - -
Bhi12g00617 733 PANTHER - 307 365 - -
Bhi12g00617 733 PANTHER - 368 712 - -
Bhi12g00617 733 PANTHER - 179 335 - -
Bhi12g00617 733 PANTHER - 338 394 - -
Bhi12g00617 733 Gene3D Tetratricopeptide repeat domain 474 704 IPR011990 GO:0005515
Bhi12g00617 733 PANTHER - 307 365 - -
Bhi12g00617 733 PANTHER - 34 194 - -
Bhi12g00617 733 PANTHER - 368 712 - -
Bhi12g00617 733 PANTHER - 338 394 - -
Bhi12g00617 733 PANTHER - 179 335 - -
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat family 198 247 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat family 496 544 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat family 67 114 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat family 397 442 IPR002885 -
Bhi12g00617 733 SUPERFAMILY TPR-like 375 651 IPR011990 GO:0005515
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat 307 333 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat 172 194 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat 40 66 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat 335 362 IPR002885 -
Bhi12g00617 733 Pfam PPR repeat 367 395 IPR002885 -
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 335 361 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 369 395 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 500 532 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 398 429 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 69 103 IPR002885 -
Bhi12g00617 733 TIGRFAM PPR: pentatricopeptide repeat domain 539 568 IPR002885 -
Bhi12g00617 733 Gene3D Tetratricopeptide repeat domain 275 364 IPR011990 GO:0005515
Bhi12g00617 733 Gene3D Tetratricopeptide repeat domain 365 449 IPR011990 GO:0005515
Bhi12g00617 733 Gene3D Tetratricopeptide repeat domain 127 259 IPR011990 GO:0005515
Bhi12g00617 733 Gene3D Tetratricopeptide repeat domain 9 126 IPR011990 GO:0005515
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Bhi12g00617 733 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00617 - - - cmax:111490947 1266.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00617 Bhi-Chr12:18905538 Bhi12g00619 Bhi-Chr12:18905538 0 dispersed
Bhi12g00616 Bhi-Chr12:18905538 Bhi12g00617 Bhi-Chr12:18905538 0 tandem
Bhi12g00617 Bhi-Chr12:18905538 Bhi12g00618 Bhi-Chr12:18905538 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00617 Bhi_Chr12 FPKM 7.793761 11.626661 13.748404 13.432284 12.643916 14.00509 13.459949 17.781038 16.090681 13.961877