Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00670 TGGGTGAGGTAATGGCGGGGAGTTTTGCCGGGAAACCAAAAAGCGCGCCAGATGCCCTAATTCATTCTTCAAATACCCATTCCTTACATCTCTCAACATCGCGCCAATTTTCCCAATCCCAATCCATTTCCCCCAAAAATGATGCACAAACGGAGAACTCTTGCTCCCAAACCCTCCTCCGCATCAGATCACGACCAATACGACGACATTTCCTGTCAGAAATGCGGCTCCGGCGACTCTCCGGCTGAGCTTCTCCTCTGCGACAAATGCGATCGAGGGTATCATCTCTTTTGTCTTACCCCCATCCTCGCTTCCGTCCCCAAGGGATCCTGGTTCTGCTCGACTTGCTCCAACCACAAGAAACTCAAATCTTTCCCTCTTGTGCAAACCAAAATTGTTGATTTTTTCCGCATCCAAAGACCTGCGGACTCTCAAACGGATTTAAGCCTAGAAAACAGAAAGAAACGAAGACGGGCTGGTAGCTTAGTACTGAGTAAAAAGAGAAGGAAGCTTTTGCCGTTTAATCCGACAGCAGATCCTGCAAGACGGTTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACAGGTACAGATTTCAGCAATGAGCTTACATATATGCGTGGGATGGCGCCAAGGTCAGCAAACTGTGCATCTCTCGAGCATGGAGGAATGCAGGTTCTTCCAAAAGAGGACGTGGAAACCTTAAACTTGTGCAGAAGTATGATGGAGAGAGGGGAATGGCCTCCCCTTATGGTTGTGTTTGATCCTCGAGAAGGGTTCACTGTGGAAGCTGATAGGTTCATAAAGGACTTGACCATAATTACAGAATATACTGGGGATGTAGATTACTTAAGGAACCGTGAACAGGATGATGGGGATAGTATGATGACATTACTGTCTGCTACTAACCCATCTAAAAGCCTCGTCATTTGTCCTGACAAACGTAGTAACATTGCCCGTTTCATAAATGGAATCAACAACCATACACCTGATGGTAGGAAAAAGCAAAACCTGAAGTGCGCAAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTGATTGCAAACAGAGATATATCTAAGGGAGAGAGATTGTATTATGACTACAATGGATATGAGCATGAATACCCCACTGAACATTTCGTGTAACCTTTTACTTTGTAAAACCCACAAAATGTCTATACAAACATCTTTATGGATGTGAGCTGATCGATCAATGCCTAATTAATAGTTTTGTTAGTTCTCTATTCTCAGTTTCAGTAGAATGTGCCCTCTAGAGCAAATAAGAAAGGAGGACAAATTCAAATTGCCTCCATACCAACAATTTATAATTCAAGTATTCACATGTTAACGCGAAT 1364 43.77 MMHKRRTLAPKPSSASDHDQYDDISCQKCGSGDSPAELLLCDKCDRGYHLFCLTPILASVPKGSWFCSTCSNHKKLKSFPLVQTKIVDFFRIQRPADSQTDLSLENRKKRRRAGSLVLSKKRRKLLPFNPTADPARRLEQMASLATALTATGTDFSNELTYMRGMAPRSANCASLEHGGMQVLPKEDVETLNLCRSMMERGEWPPLMVVFDPREGFTVEADRFIKDLTIITEYTGDVDYLRNREQDDGDSMMTLLSATNPSKSLVICPDKRSNIARFINGINNHTPDGRKKQNLKCARFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19817520 19820012 - XM_039019622.1 Bhi12g00670 52482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00670 338 ProSiteProfiles SET domain profile. 204 326 IPR001214 GO:0005515
Bhi12g00670 338 CDD SET_ATXR5_6-like 201 338 - -
Bhi12g00670 338 MobiDBLite consensus disorder prediction 1 20 - -
Bhi12g00670 338 SMART PHD_3 25 71 IPR001965 -
Bhi12g00670 338 ProSiteProfiles Zinc finger PHD-type profile. 23 73 IPR019787 -
Bhi12g00670 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 86 IPR013083 -
Bhi12g00670 338 SUPERFAMILY FYVE/PHD zinc finger 12 77 IPR011011 -
Bhi12g00670 338 PANTHER HISTONE ACETYLTRANSFERASE 3 335 - -
Bhi12g00670 338 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 335 - -
Bhi12g00670 338 SUPERFAMILY SET domain 196 326 IPR046341 -
Bhi12g00670 338 CDD PHD_RSF1 26 70 - -
Bhi12g00670 338 ProSitePatterns Zinc finger PHD-type signature. 26 70 IPR019786 -
Bhi12g00670 338 Gene3D SET domain 110 338 IPR046341 -
Bhi12g00670 338 Pfam SET domain 246 326 IPR001214 GO:0005515
Bhi12g00670 338 Pfam PHD-finger 26 72 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00670 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 639.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00711 Bhi-Chr2:14258415 Bhi12g00670 Bhi-Chr12:19817520 9.66E-06 dispersed
Bhi10g01660 Bhi-Chr10:41998360 Bhi12g00670 Bhi-Chr12:19817520 5.13E-124 dispersed
Bhi10g01661 Bhi-Chr10:41998363 Bhi12g00670 Bhi-Chr12:19817520 1.52E-160 dispersed
Bhi12g00670 Bhi-Chr12:19817520 Bhi12g00252 Bhi-Chr12:7696541 2.35E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2600 PF00856 SET 7.40E-05 No_clan Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00670 Bhi_Chr12 FPKM 0.271448 0.0 0.636291 0.551139 0.0 0.0 0.395818 0.320898 0.472332 0.532966