Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00740 TACGATACGAGAGTATTCTCTCCTTTTAGCTTGTACTCACAGTTTCCGATGCCATACTGAACTTCGTCCATTCAACTTATCCGATCGCAAAGCATTAAGAAAAGAAGAATGCCACCTGCCCCGGTTGTTGAGTCCGCCGAGCCTGAGCAGGAGAGCCACCAATTCTCGTCTGCAGCCGAATTGGAGAAGAAGCTTCAGTGTGATGACAAACCGATTGTTGAAGACGTGGATGACGATGAGGATGATGACGAGGATGATGAAGATGACGGAAAGGAGAACGGGGCTCTTGGTTCAAATGAGAGTTCAAAGCAGAGCAGGAGTGAAAAGAAGAGTCGCAAGGCTATGCTGAAGCTGGGTATGAAACCAGTTACTGGGGTTAGCAGAGTAACCATTAAAAGAACAAAAAATATTCTGTTTTTCATATCAAAACCTGATGTGTTCAAAAGTCCAAATTCTGAGACGTACGTGATATTTGGAGAGGCAAAGATAGAGGATTTGAGTTCTCAGTTGCAGACACAAGCTGCTCAGCAATTCAAGATGCCAGACATGGGGCATGTGATGGGAAAACCAGACATTTCTGGTACTGTGGAAGCTGGAGCATTGGGAGAAGAGGAGGAAGAGGAAGAAGAGATTGATGAATCTGGGGTGGAGGCTAGGGACATTGATTTGGTAATGACACAGGCTGGCGTCTCCAGGACCAAGGCAGTAAAAGCTCTCAAGACTCACGACGGGGATATTGTAAGTGCCATAATGGAGCTCACAACTTGAGTCATACCCTCTCCCATCCGTTTTCTTGCTTTGCTTTTGGTGGTGATTCATGAGTTCATAAGTTAAAAAGTCTCCACCTTAATTTGCTTGCTGTCAATTCAAGTTTTTGTACTTTCTATTCATTTTGCCTTATTCTTCTTCATTTGTTTGTTGTTATAGCTGCCTGGACATCCAATTCCATTTACATAGCCAGCTTCATATTGTGACTTGTTCTTGTAGTTAGACTTATTGGATTACTTCTTTCTTTCTTCTTTCTTGGAGGGTGTATGCATTTATGGATGCTTTTTAGTTTGACAAGTACGAACAAAAACAATTACAATTCAATGAAATGGTAGTTTATCAAAA 1113 42.23 MPPAPVVESAEPEQESHQFSSAAELEKKLQCDDKPIVEDVDDDEDDDEDDEDDGKENGALGSNESSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFKMPDMGHVMGKPDISGTVEAGALGEEEEEEEEIDESGVEARDIDLVMTQAGVSRTKAVKALKTHDGDIVSAIMELTT 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21269135 21270904 + XM_039018902.1 Bhi12g00740 52552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00740 219 Gene3D - 180 217 - -
Bhi12g00740 219 ProSiteProfiles NAC A/B domain profile. 69 134 IPR002715 -
Bhi12g00740 219 MobiDBLite consensus disorder prediction 20 35 - -
Bhi12g00740 219 Pfam NAC domain 72 127 IPR002715 -
Bhi12g00740 219 CDD UBA_NAC_euk 182 218 - -
Bhi12g00740 219 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 13 218 - -
Bhi12g00740 219 SMART NAC_2 72 128 IPR002715 -
Bhi12g00740 219 Pfam HYPK UBA domain 180 218 IPR044034 -
Bhi12g00740 219 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 13 218 IPR016641 GO:0005854
Bhi12g00740 219 MobiDBLite consensus disorder prediction 1 80 - -
Bhi12g00740 219 Gene3D - 78 131 IPR038187 -
Bhi12g00740 219 MobiDBLite consensus disorder prediction 36 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00740 K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha - vvi:100854239 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02529 Bhi-Chr3:61233535 Bhi12g00740 Bhi-Chr12:21269135 1.42E-71 dispersed
Bhi03g02531 Bhi-Chr3:61280743 Bhi12g00740 Bhi-Chr12:21269135 4.75E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00740 Bhi_Chr12 FPKM 2.083885 3.475912 27.52491 26.723545 6.988242 8.430744 7.581695 25.492418 28.308229 25.329775