Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00853 CCAAAACTTTAGACAAAGACGAAGAAATATGAGATAAGAGAGAGAAAAGTCAAAGCTCAAAAGCGCAATTCAGTGCACCAGTGCATGTAACGCCTCATAGAAATGGAGATTAGAGAGAGAAGAACCAGAAAACGAAGGGTTGAAGGGCAGACCCAGTGGCAGTGGGGGCGTGGGGGTACCCTCTTCCTCCTTCCCTTGCTCTGTCCTCTTACATTCATGGATATCATCAAGAAAACTCGGGGCTTGTTCAACTTTATCCATCCAAAAATGGGAAAAATCTGTATTCTGTATTCCCCCACCCACAAACCTAGTGTCTCTCTGTGTCATTTTGCCTTAGATTCGTGTACCTACAAAGCATTCGCCATTGAAACCCATCCCCACAAACCCCATTTTGTCATTGCCCTCTACGTGTTTGATGAATGTCCCCTGTGAAGGTTTTGCTCCTGTTAGTGCAATGTGTTGCCTATTCAACCTCCCCTTTTGCCTCCTTGTTCAAGTCCCTTTTGGAAGCTCCCAAATACTATCTCTGTGGGTAATGGAGGAAATGGGTCATTGGGTCACTGATTCTCTCCCTAGCTTTGCCAAAAATCTCCATATTTTGCTGGTGGATCATGACCCCTTCTCTCTCAAGCACTTGGCTTCATTGCTTGAGCAACAGTCTTACAATGTTACCACCACTCAACTAGCATCTATTGCACTATCAATGATTCAGGAAAAAGGTGACCGGTTTGACCTTGTCATGGCTAACGTTAGCATGCCTGATATGGACAGTTTTTCATTTTTGCACGTGCTCCTTAAGATGAATATTGCCGTCATTTTTATGTCCTCGGGGATGAACTTGAGCGTGGCCACGAAAGCATTGGCAGAAGGAGCATGCTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTGTGGCAACATGTGTATCGAGGGAACAGAAACATAACCAAACAAACCTATAAAGAAAATTGCATAGGAAAAGCCAAACCTAGAAAAGAATCTGTAGGTATCCAAATTGCGGACACTGTTGTTTTGTCTCGGTCTGCCGCTGCAGTTAGTTATAATAATAATTGTTGCCTTAATTATGAACCTATGAACTCTAAAGAAACGGAGAATAGTAAGCAAATTATATCGCATGATAGCCTGGTTGGGTCTTATTTTGGAGGAAAGAGATTAAATGATGACATAGAAGGAATAAGCAGGGAAAAGAGAGTTAAATATTACTTAGAACCTACCAAGTTTGGATTTCCTAGAATTGATGCGGATCATGAAAGAAGGAAGGAATATTATATTGCCAGTGATAGCAGATCACGTGTCGTCTGGAATGCGGAACGACGTCGGAAGTTCACAGATGCCCTTAACAAGCTAGGTGATAAATCTCGCCCAAAACTTATACTGAAGATGATGAACGAACCATGTTTGACCTTGCGCCAAGTTGCAAACCACCTGCAGAAATACAAAGCTCAAGTAGAATGCATCAAAAGGAGGAGAGAGAATAAATTAACTAACAGAAGGGAGGGATCCAAATCCAATTTCTCAGTCGGTACTCAACTTCCCCCACTGCTGCAGCAGCACCATGAGGCAAGCAGATTTTCAAACGTAGGCTTGACCTCTGTTTTGGGGGGTGAAAGATTCCAACTTATCGCGCCTAAAAGTCTGCATAGTCCTAGACTGCCTGTTAGCAACTTTGTGAATCGTGATCTGAGAATGCTTAACCACAGTTTTCAGCATGTCGGCTCAAACTACGATTCAGTTTCATATAACATCAATAAGGAAGTTGGATTATGCCCTGATAATATTCAAACATTTCAGAAGGAAGGTAGTGCTTTCCGCACTGACAATTGTGAGAAGTCTGCTCCCATAGGAGGAGGGGGTGTTCAAACATCTGAGTTGAACTTCTCATATGTTTCTGAAATGACTCCAGAGGTGGCTTCTTCTCACATACTTGATGAAACTCAATTCCCAAACAATCTTCTTGATGGTGTAATTCAGCAGCTAGATTTGACTGCTTTCAAAATTGAAAACCAAGAAGCATTGGAATATAGTGGTACATCAAAAGAGATTCAGTTGATGTCAAGGGACATAGCATTACCTGATTCGATCAACTTGGACAATGTTGTTGAGGGGGGACAGGAACTTCCTGCAGCTTCTGAAAGTCAAGGAAACCAACTATTAGCAGAATATGCACATCTCTTAGATGTATTAGAAGATGATCCATACAATTTCGTTAGTGACTTAAATCTGAGTGATGTTGATAAATACAGTGAATGGCTGAGGAACACTGTACTCGGAAACAGAAGCGGTCCAGACAGTTTTATCGGTGACAATGCAGAGAACTTTCCAGTTGAAAACACTCGATAACTTTTTTTGGTGCTTACAGAATCATGAGACTCATGTTGCTGATGTACTCTCCGGATATGTGGACAAGAATCAGATAGGAAGCAACTAAACTACAATTATATGTCGGGGACTGGGAGTTATATTATACAAGGGGAAGATATACAGCGTTGAGAATTCTGTTGGAAGCGAATCCTTTAAACTGTACAGGACTAGATAAATGCAGAAAGCTAGCATTAGAAACTTTACATGTTTAGCAATGTTCATAAGTTTATCATGTAGTGTATTGTCCAGCTTTTCTTTTCTGTGATCTACTTCAGATGAATCAGTACTCATAATATTAACCATTTCTTCTGAAA 2706 41.09 MNVPCEGFAPVSAMCCLFNLPFCLLVQVPFGSSQILSLWVMEEMGHWVTDSLPSFAKNLHILLVDHDPFSLKHLASLLEQQSYNVTTTQLASIALSMIQEKGDRFDLVMANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISKDDLKYVWQHVYRGNRNITKQTYKENCIGKAKPRKESVGIQIADTVVLSRSAAAVSYNNNCCLNYEPMNSKETENSKQIISHDSLVGSYFGGKRLNDDIEGISREKRVKYYLEPTKFGFPRIDADHERRKEYYIASDSRSRVVWNAERRRKFTDALNKLGDKSRPKLILKMMNEPCLTLRQVANHLQKYKAQVECIKRRRENKLTNRREGSKSNFSVGTQLPPLLQQHHEASRFSNVGLTSVLGGERFQLIAPKSLHSPRLPVSNFVNRDLRMLNHSFQHVGSNYDSVSYNINKEVGLCPDNIQTFQKEGSAFRTDNCEKSAPIGGGGVQTSELNFSYVSEMTPEVASSHILDETQFPNNLLDGVIQQLDLTAFKIENQEALEYSGTSKEIQLMSRDIALPDSINLDNVVEGGQELPAASESQGNQLLAEYAHLLDVLEDDPYNFVSDLNLSDVDKYSEWLRNTVLGNRSGPDSFIGDNAENFPVENTR 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25876654 25881508 - XM_039019614.1 Bhi12g00853 52665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00853 651 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 302 353 IPR006447 GO:0003677
Bhi12g00853 651 SMART REC_2 59 170 IPR001789 GO:0000160
Bhi12g00853 651 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 641 IPR045279 GO:0009736
Bhi12g00853 651 Coils Coil 341 368 - -
Bhi12g00853 651 Gene3D - 58 190 - -
Bhi12g00853 651 Pfam Response regulator receiver domain 61 167 IPR001789 GO:0000160
Bhi12g00853 651 CDD REC_typeB_ARR-like 61 174 - -
Bhi12g00853 651 SUPERFAMILY Homeodomain-like 300 354 IPR009057 -
Bhi12g00853 651 Gene3D - 298 358 - -
Bhi12g00853 651 ProSiteProfiles Response regulatory domain profile. 60 174 IPR001789 GO:0000160
Bhi12g00853 651 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR11-LIKE 55 641 - -
Bhi12g00853 651 SUPERFAMILY CheY-like 57 180 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00853 - - - bhj:120067959 1307.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00851 Bhi-Chr12:25876654 Bhi12g00853 Bhi-Chr12:25876654 0 dispersed
Bhi12g00853 Bhi-Chr12:25876654 Bhi12g00855 Bhi-Chr12:25876654 0 dispersed
Bhi12g00852 Bhi-Chr12:25876654 Bhi12g00853 Bhi-Chr12:25876654 0 tandem
Bhi12g00853 Bhi-Chr12:25876654 Bhi12g00854 Bhi-Chr12:25876654 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g686 Blo06g01126 Blo15g00166 . . . . Bma10g01224 Bma14g02083 . . . . . . . . . . . . . . . . Cla01g00267 Cam01g0274 Cec01g0267 Cco01g0282 Clacu01g0274 Cmu01g0262 Cre09g2246 . . . . . . . . . Blo09g00113 . . . Bpe12g00435 Bma08g00325 . . . . . . . . . . Bhi12g00853 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2614 PF00072 Response_reg 1.30E-15 CL0304 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00853 Bhi_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 1.042398 4.938028 5.599905 6.450576