Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00856 TTTGTTTTCCCTCCATTTCCGACTCCCCTAAATCTTCATCCTATAAAACCATTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACTATTGCTGCTGCGACTACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAGCAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAATCTCCTCTTCAAAATCGATAAGCAACCACCTCTATCAAACCCGCGTGGTACAAGATCACCAGGAAATGGTCAATCGCCATAGTCTCTGCCTTACTCATCTTCGGGAAGCAACCGAAGAAGCTGATGCTCTTCGACAAGAGAATATCCACCTCAGAACTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTATGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTATGGAAGGATTCCGCGGACTCAGTGTAGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGATGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGAGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCTAAGAGCATCTCCGTGAGGTCTAATGGATACTTGAAGATGGCACAAGCCGGCACCAGCCACGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGAAGGTGTATGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAACTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAGGAAACAGGCAGCTGCCCCTATGGAGACCATTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCTCGCTACAAGACAGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGCCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGAACCACCACCCCTAAGCTCGACAGGTGAATATTATTTTACCAAACTGATCCTTAATATTCAACATATAAAACCAATGATATAAGTCATACACAGTGATTTGTTTGTTTGTTGTAAGCCTCAAATGAGAGCGGTAAATAATATCCCATATAAGTATAAAACACAAAGTAGGAACATATATTCAAATCATTAGAGACCAGTTAGTTTGTTCTGGGTAGATATTGAGGCCACAATGATGGAGATACCGAGATAAAAAAGGAGAAATATAGGAAGAAAGAGTCATGCCCTTTTGCTATGCTGTTGATCCTTTTTGTTCTTCCAAACTCCAAGTTTTTGAAACTCTGATAGCCTGTGCCTTAAGCAGAGCAAACTATGTGTAAAGGCTGAGGATACCTGTTTTTTTGTGGATACTGTTGATTTGA 1554 46.65 MHKSTTSASNTIAAATTMSSSSQLKSQLQANDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSISSSKSISNHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRTINHELSKHLSLLIHASVQKQYGSSDQAPPFNFMEGFRGLSVAEKGASSSAWDDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSHGGKVRASSRPRTASPVKVTKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25931940 25935466 + XM_039019797.1 Bhi12g00856 52668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00856 348 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Bhi12g00856 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 286 IPR000571 GO:0046872
Bhi12g00856 348 ProSiteProfiles Zinc finger C3H1-type profile. 260 288 IPR000571 GO:0046872
Bhi12g00856 348 SUPERFAMILY CCCH zinc finger 257 292 IPR036855 GO:0046872
Bhi12g00856 348 Coils Coil 100 120 - -
Bhi12g00856 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 57 337 - -
Bhi12g00856 348 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Bhi12g00856 348 SMART c3hfinal6 260 287 IPR000571 GO:0046872
Bhi12g00856 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 57 337 IPR045877 GO:0003729
Bhi12g00856 348 SUPERFAMILY CCCH zinc finger 294 328 IPR036855 GO:0046872
Bhi12g00856 348 Gene3D - 294 330 - -
Bhi12g00856 348 Gene3D - 254 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00856 K18753 ZFP36L; butyrate response factor - csv:101203274 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g01760 Bhi-Chr9:47915409 Bhi12g00856 Bhi-Chr12:25931940 1.62E-07 dispersed
Bhi09g01761 Bhi-Chr9:47915409 Bhi12g00856 Bhi-Chr12:25931940 1.62E-07 dispersed
Bhi12g00856 Bhi-Chr12:25931940 Bhi06g01970 Bhi-Chr6:54247220 3.15E-07 dispersed
Bhi12g00856 Bhi-Chr12:25931940 Bhi12g00857 Bhi-Chr12:25931940 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2617 PF00642 zf-CCCH 5.40E-12 CL0537 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00856 Bhi_Chr12 FPKM 18.618105 18.715134 20.493502 22.346682 20.681299 20.049587 22.892941 18.607805 18.121998 19.031107