Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bhi12g00867 | CCACTCTCATTATCGAACCCTATGCTGAGCTTCTGAAGCCCTAGCGAGCGATGGCTTCACGCAGACTCTTATCTTCTCTTCTTCGATCGTCGGCACGGCGGTCTTCTTCCAGATCTCCGATCTCATCCCCCAACCCCAGGATTCCATTGTCTAACACTTCTCGCGCTTCCCCTTATGGCTACCTCCTCAACCGTGTGGCTCAGTACGCCACCTCCGCCGCCGCTGCTTCACCACCGTCCCCACCACCATCCGCTAAGCCGGACGCGGGAAAGAGCGGCAAGATCACTGACGAGTTCACTGGCGCCGGCGCGATCGGCCAGGTTTGTCAAGTGATTGGAGCCGTCGTCGATGTCAGATTCGATGAAGGGTTGCCTCCAATTCTTACGGCGCTTGAGGTGCTTGATCACTCGATCCGTTTGGTGCTGGAGGTGGCGCAGCATTTGGGAGAGAATATGGTCAGGACTATTGCTATGGATGGTACGGAAGGGCTCGTTCGAGGGCAGAAAGTGCTCAACACTGGTTCTCCTATCACTGTTCCAGTTGGTAGAGCTACTCTTGGACGTATTATAAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGACCTTAAGACCGATCACTATTTGCCTATTCACAGAGAAGCCCCAGCCTTTGTTGAGCAAGCAACTGAGCAGCAAATTCTTGTAACTGGTATTAAGGTCGTTGACCTTCTTGCTCCATATCAAAGAGGAGGAAAGATTGGGCTCTTTGGTGGTGCTGGTGTGGGAAAAACTGTGCTTATCATGGAACTTATCAACAATGTTGCGAAAGCTCATGGTGGTTTCTCAGTGTTTGCTGGTGTTGGAGAACGCACTCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGATAAACAGGCTGATAGCAAATGTGCTCTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCACGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCCGAACACTTCCGTGATGCTGAAGGACAGGATGTGCTTCTCTTCATTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTGTCTGCACTGCTTGGACGTATTCCATCTGCTGTCGGTTACCAACCAACCTTGGCTACTGATCTGGGAGGCCTTCAAGAACGTATTACCACCACTAAGAAAGGATCTATTACTTCTGTACAAGCTATCTATGTGCCTGCTGATGATTTGACTGATCCTGCCCCTGCTACCACCTTTGCTCACTTGGATGCTACAACTGTGTTGTCCCGTCAGATTTCGGAGCTTGGTATTTATCCTGCTGTGGATCCTCTCGATTCTACATCTCGTATGCTCTCTCCTCATATTTTGGGAGAGGATCACTATAATACTGCTCGTGGAGTACAGAAGGTTCTCCAGAACTACAAAAATTTGCAAGATATTATTGCCATTCTGGGAATGGACGAGCTCAGTGAAGATGATAAGTTAACTGTTGCTCGTGCTCGTAAAATCCAACGGTTCTTGAGCCAGCCTTTCCATGTCGCTGAAGTATTTACTGGGGCACCTGGCAAATATGTGGAGCTGAAAGAAAGTATCAACAGTTTCCAGGGAGTTTTGGATGGAAAGTATGACGACCTTCCCGAACAATCATTCTACATGGTTGGAGGCATTGAAGAGGTGATTGCCAAGGCCGAGAAGATTGCCAAGGAATCTGCTGCCTAATTATCATTATCATCATTGACGTCGTCCTATTTCACAACTCCCCATTTTTCTCCTTGTAATTGTGAAGATCAATAATTTAGGCGATGTTGGCAAATGTTGTCTGTCAACAAGATTTTCATTTATATATATTTTTTTGGAGATGTCTTGTACCAAGATCTTCCCCTTGCCATTTTAGTGTGTTGAAGAGAAATTTAACTGACTGGCCTGCCCCTTTTTTTTGTTGTTCTTTGAATAAGGGGGAAAATGGATTCAGAACTTTTGTATACTTTCTTTTCCCAATCAATTCCAAAACGTTGGATGCAGTTTAGAAGTTA | 2044 | 46.62 | MASRRLLSSLLRSSARRSSSRSPISSPNPRIPLSNTSRASPYGYLLNRVAQYATSAAAASPPSPPPSAKPDAGKSGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA | 559 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 26270005 | 26274389 | + | XM_039018940.1 | Bhi12g00867 | 52679 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bhi12g00867 | 559 | Pfam | ATP synthase alpha/beta family, nucleotide-binding domain | 214 | 435 | IPR000194 | GO:0005524 | |
| Bhi12g00867 | 559 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 161 | 441 | IPR027417 | - | |
| Bhi12g00867 | 559 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
| Bhi12g00867 | 559 | ProSitePatterns | ATP synthase alpha and beta subunits signature. | 426 | 435 | IPR020003 | GO:0005524 | |
| Bhi12g00867 | 559 | CDD | F1-ATPase_beta | 159 | 440 | - | - | |
| Bhi12g00867 | 559 | CDD | ATP-synt_F1_beta_C | 442 | 549 | - | - | |
| Bhi12g00867 | 559 | PIRSF | ATPase_subunit_beta | 7 | 559 | - | - | |
| Bhi12g00867 | 559 | SUPERFAMILY | C-terminal domain of alpha and beta subunits of F1 ATP synthase | 438 | 554 | - | - | |
| Bhi12g00867 | 559 | PANTHER | ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL | 3 | 558 | - | - | |
| Bhi12g00867 | 559 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Bhi12g00867 | 559 | TIGRFAM | atpD: ATP synthase F1, beta subunit | 88 | 553 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Bhi12g00867 | 559 | PANTHER | ATP SYNTHASE | 3 | 558 | - | - | |
| Bhi12g00867 | 559 | CDD | ATP-synt_F1_beta_N | 87 | 160 | - | - | |
| Bhi12g00867 | 559 | Gene3D | - | 77 | 159 | - | - | |
| Bhi12g00867 | 559 | Gene3D | ATP synthase, F1 beta subunit | 1 | 52 | IPR042079 | - | |
| Bhi12g00867 | 559 | SMART | AAA_5 | 226 | 498 | IPR003593 | - | |
| Bhi12g00867 | 559 | Gene3D | - | 160 | 437 | IPR027417 | - | |
| Bhi12g00867 | 559 | SUPERFAMILY | N-terminal domain of alpha and beta subunits of F1 ATP synthase | 86 | 159 | IPR036121 | GO:0046034|GO:1902600 | |
| Bhi12g00867 | 559 | Gene3D | - | 438 | 559 | IPR024034 | - | |
| Bhi12g00867 | 559 | Pfam | ATP synthase alpha/beta family, beta-barrel domain | 91 | 157 | IPR004100 | GO:0046034|GO:1902600 | |
| Bhi12g00867 | 559 | Hamap | ATP synthase subunit beta [atpB]. | 86 | 553 | IPR005722 | GO:0015986|GO:0045261|GO:0046933 | |
| Bhi12g00867 | 559 | Pfam | ATP synthase F1 beta subunit | 1 | 48 | IPR020971 | GO:0000275|GO:0005524|GO:0006754|GO:0016887 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bhi12g00867 | K02133 | ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta [EC:7.1.2.2] | - | csv:101205618 | 982.63 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bhi07g01249 | Bhi12g00867 | CCT | |
| Bhi07g01249 | Bhi12g00867 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bhi03g02169 | Bhi-Chr3:47174771 | Bhi12g00867 | Bhi-Chr12:26270005 | 1.97E-08 | dispersed | |
| Bhi05g01683 | Bhi-Chr5:54939079 | Bhi12g00867 | Bhi-Chr12:26270005 | 3.18E-28 | dispersed | |
| Bhi05g01684 | Bhi-Chr5:54939079 | Bhi12g00867 | Bhi-Chr12:26270005 | 3.18E-28 | dispersed | |
| Bhi11g02151 | Bhi-Chr11:60345985 | Bhi12g00867 | Bhi-Chr12:26270005 | 5.47E-150 | transposed | |
| Bhi03g02023 | Bhi-Chr3:43288261 | Bhi12g00867 | Bhi-Chr12:26270005 | 3.56E-16 | transposed | |
| Bhi09g00220 | Bhi-Chr9:4811721 | Bhi12g00867 | Bhi-Chr12:26270005 | 1.09E-26 | transposed | |
| Bhi12g00867 | Bhi-Chr12:26270005 | Bhi07g01249 | Bhi-Chr7:39074486 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g390 | . | Blo16g00724 | Bda01g01841 | Bda11g00156 | Bpe13g01042 | . | . | . | Cmo04g01546 | Cmo18g00993 | . | Cma18g00985 | Car04g01533 | Car18g00906 | Sed06g1923 | Cpe09g00332 | . | Bhi07g01249 | Tan04g0788 | Cmetu03g1471 | Lac13g0552 | Hepe01g1147 | . | . | Cla05g02261 | Cam05g2430 | Cec05g2447 | Cco05g2493 | Clacu05g2419 | Cmu05g2286 | Cre05g2404 | Cone13ag0789 | Cone19ag0792 | Cone6ag0416 | Cone9ag0439 | Lsi04g00205 | Csa05g02046 | Chy10g01193 | Cme10g00209 | . | Blo11g01023 | . | Bda11g00156 | . | Bpe02g02015 | . | Bma06g01100 | . | Cmo04g02190 | Cmo15g00978 | Cma04g02088 | Cma15g00938 | Car04g02027 | Car15g00881 | Cpe13g00384 | . | Bhi12g00867 | . | . | . | Hepe02g2675 | . | Lcy10g1453 | Cla01g00589 | Cam01g0615 | Cec01g0606 | Cco01g0631 | Clacu01g0607 | Cmu01g0580 | Cre09g1925 | Lsi09g00638 | . | Chy09g00876 | Cme09g01409 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000576 | 6 | 4 | 5 | 5 | 3 | 4 | 4 | 3 | 3 | 2 | 3 | 2 | 4 | 3 | 3 | 7 | 4 | 5 | 2 | 4 | 2 | 0 | 2 | 2 | 3 | 3 | 3 | 6 | 3 | 2 | 102 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bhi12g00867 | Bhi_Chr12 | FPKM | 2.038002 | 2.201641 | 14.859278 | 15.837529 | 24.452486 | 27.424044 | 25.001268 | 5.890731 | 5.92092 | 5.434396 |