Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00871 TTAACCGACAACCAAATTTCAAGGCACTTTTGGCCTTTCCTCCAACAAAATCTGCTCTATTTATTTATTTGTTTTTTCCACATCATCATTGTTACACGTGTCATCCATCAGATGGAACTCATTCCCAATCCTTTGACTTTGACGACTTTAGTCAATAAAACCCTAACCCAACTCTTAAACCTTTTTTTTTTTTTTCTCTTTTCTTTTTGTATATATGACCCTTTCCTCAACTCACCCTTTATATAGCTTCTCTTTTTAATTAATTCTTTCCCTTTCTTCTTCTTCCTTTATAATTTTCATGGCGATTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCTGGCTTTGCTTCTCCACCGACTCGTTCTTCGTTTGTGAGAGAATTGGACATAAATCAAGTACCGGCAGCAGGAGAAGCGGAGGTCGAAGAATGGGCCGTGGCACCGAGCGCTGAGGAGGAGGAGGAAGAAGAAAGCTGCACTAATAATGGAGGTACCCAACCAAGGAAGAAGCTTCGCCTGTCAAAGGATCAATCTCGTCTTCTTGAAGCAAGCTTTAGGCTCAATCATACATTAAACCCGAAGCAAAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCCAGACAAGTTGAAGTTTGGTTTCAGAATCGGAGGGCCAGGAGCAAATTGAAGCAAACTGAGATCGAATGTGAGTATTTGAAGAGATGGTTTAGATCATTAACAGAGCAAAACCGCTGGTTGCGGCGGGAATTGGAGGAGCTGAGAGCCATCAAGGTTGCTCCACCTGCCATTGTCTCGCGCCGCGACCGACAACCGCCCCTCTCGACGTCTACTATAACCATGTGTCCTCGATGTGAGCGTATAACATCTACTAAGGCTGCAGTCACTGAGACCGCCATCGCCGCCACCACAATGTCATCGAAGGTGGTTCTGTCCGCCCTCAAATTACGGTAGCTGTCATGAGGTTGTTGATAGACGGAACAAAAAGGCTAGAAATAAACAAATAATAACAATAAACTAAGGTAGAAAATGACTGTAGGTTGTTCCTCTATTGAATTGTATTTTTTTTTCTTTCTATTTTAACGTACGAACGT 1107 42.73 MAIFPINSSNLDLSISMPGFASPPTRSSFVRELDINQVPAAGEAEVEEWAVAPSAEEEEEEESCTNNGGTQPRKKLRLSKDQSRLLEASFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEIECEYLKRWFRSLTEQNRWLRRELEELRAIKVAPPAIVSRRDRQPPLSTSTITMCPRCERITSTKAAVTETAIAATTMSSKVVLSALKLR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26344338 26347969 + XM_039019603.1 Bhi12g00871 52683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00871 222 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Bhi12g00871 222 Gene3D - 66 136 - -
Bhi12g00871 222 MobiDBLite consensus disorder prediction 53 78 - -
Bhi12g00871 222 Coils Coil 142 162 - -
Bhi12g00871 222 CDD homeodomain 72 130 IPR001356 GO:0003677
Bhi12g00871 222 PANTHER - 1 211 - -
Bhi12g00871 222 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Bhi12g00871 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 211 - -
Bhi12g00871 222 SMART HOX_1 71 133 IPR001356 GO:0003677
Bhi12g00871 222 Pfam Homeodomain 73 127 IPR001356 GO:0003677
Bhi12g00871 222 SUPERFAMILY Homeodomain-like 62 130 IPR009057 -
Bhi12g00871 222 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00288 Bhi-Chr7:12969474 Bhi12g00871 Bhi-Chr12:26344338 7.73E-77 dispersed
Bhi12g00869 Bhi-Chr12:26344337 Bhi12g00871 Bhi-Chr12:26344338 3.33E-149 dispersed
Bhi12g00871 Bhi-Chr12:26344338 Bhi03g01084 Bhi-Chr3:22004589 3.16E-51 dispersed
Bhi12g00870 Bhi-Chr12:26344337 Bhi12g00871 Bhi-Chr12:26344338 4.92E-150 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2621 PF00046 Homeodomain 1.00E-16 CL0123 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00871 K09338 - csv:101206325 277.33