Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00878 CTTCGACGGAGGAAGCTACCAAAAAATTGGTTCTACAATTTCAATACGTGACAACAAGATTGGAAACTGCACTTTCAAATCTGCCGTACGACCACTTTTGTGTCTCAGACGAAGTACAAGAACAGAAAAGAAGCTTCAAACTCGAGGTTCTGTAAAATGGATGATCAATAATGATGTCAAGAGTATTTCTAGTGTTGATGATGGAGATGTAGAGTCTCAGCATCATCCTCGGAACTGCAATTATCCGACTAGTTTCGATTCGGTGAATTCTTGTTTTGATGAGAGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGAGGTTAGGAAGCCTATTGAAGTTGACATTCCTGAAAACTTCTTGTGCCCCATTTCCTTTGAGTTGATGTTGGATCCCGTCATCTGCTCGACCGGACAGACATATGAAAGATCCAACGTACAAAATTGGATAGACAGAGGAAATAGAACATGTCCAAAAACTCAGGAGCAGCTCCAAACTCTGATCCTCACTCCAAATTTTCTAATGAGAAAACTGATAGCTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGATTAACCAGCAGGAAATTTAAGAAGTATAGATCCTTCGAAGACGACTGCCGAAGGACTCTGCCGATAAAAACTCTCGTTCGACACCTTTCATTCGGGTCAATTCAGGAGCAGAAAATAGCTGTAACCGAGATTCGAAAACTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATATTGTAACACAAGAGAATGCAATGTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCTGTTTCTTACATTTCCAAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCGTTAGCCGATGAGAACAAGGCAATAATCGGGGCTTCAGGTGTGATACCGGACCTGTTAGAAATTCTCGAGATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAGACCATTGTTGAAAATACTCTCTGATCCAAATGGATCTTTGGTTGATGATGCTCTCTATATAATGTCAGTTCTTTGCGGCCACCCAGAAGCGAAAGCTGCAATGGCGAATGCGAATACGCTGCTCGTATTGACCGATGTTCTGAAGATGGGATCCTCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACTAGGCTTGGCGCAATGGCGTCGTTGATGAAACTTGCGGAGAACGGCACGGGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAACAACTCAGAAAGTCATGAACAAGATTCAAATCAGTTTCTGCTGTGCTCTGAGAGCCTCAGTTCTTCTATGGCCTTCTTTTTCTTTTTGACATTTACATAAAAAACAATGTGAATAGTTTTATTTTTCTTTTGAGTTTATCATATTCAAGTCTGTTTTTGCTAGTTTATGCATTTTTTTTGTCTCAA 1666 42.68 MINNDVKSISSVDDGDVESQHHPRNCNYPTSFDSVNSCFDESSSVVHSDMEDVLASKSQDEVRKPIEVDIPENFLCPISFELMLDPVICSTGQTYERSNVQNWIDRGNRTCPKTQEQLQTLILTPNFLMRKLIAEWCEEHNVKLEEGLTSRKFKKYRSFEDDCRRTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDIVTQENAMSCILNLSLHEQNKRLVMLSGAVSYISKVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEILEIGSPRGQKDAAGALLNLCMYQGNKGRALKAGIVRPLLKILSDPNGSLVDDALYIMSVLCGHPEAKAAMANANTLLVLTDVLKMGSSRSKENAAAVLLALCKGDWEKLEWLTRLGAMASLMKLAENGTGRARRKAASLLEQLRKS 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26656113 26660367 - XM_039019738.1 Bhi12g00878 52690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00878 445 PANTHER U BOX DOMAIN-CONTAINING 40 444 - -
Bhi12g00878 445 MobiDBLite consensus disorder prediction 1 25 - -
Bhi12g00878 445 SMART arm_5 239 279 IPR000225 GO:0005515
Bhi12g00878 445 SMART arm_5 280 320 IPR000225 GO:0005515
Bhi12g00878 445 SMART arm_5 362 402 IPR000225 GO:0005515
Bhi12g00878 445 SMART arm_5 198 238 IPR000225 GO:0005515
Bhi12g00878 445 SMART arm_5 321 361 IPR000225 GO:0005515
Bhi12g00878 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 152 IPR013083 -
Bhi12g00878 445 SUPERFAMILY RING/U-box 65 143 - -
Bhi12g00878 445 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Bhi12g00878 445 Pfam Armadillo/beta-catenin-like repeat 198 237 IPR000225 GO:0005515
Bhi12g00878 445 Pfam Armadillo/beta-catenin-like repeat 281 319 IPR000225 GO:0005515
Bhi12g00878 445 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Bhi12g00878 445 Pfam U-box domain 70 141 IPR003613 GO:0004842|GO:0016567
Bhi12g00878 445 Gene3D - 325 445 IPR011989 -
Bhi12g00878 445 Gene3D - 166 324 IPR011989 -
Bhi12g00878 445 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 40 444 - -
Bhi12g00878 445 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Bhi12g00878 445 SUPERFAMILY ARM repeat 169 442 IPR016024 -
Bhi12g00878 445 CDD RING-Ubox_PUB 74 116 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00878 Bhi-Chr12:26656113 Bhi12g00880 Bhi-Chr12:26656113 0 dispersed
Bhi12g00878 Bhi-Chr12:26656113 Bhi12g00879 Bhi-Chr12:26656113 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00878 - - csv:101215873 761.911