Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00879 ATGAGCAGGGAAGTTGTTGGAGACGGTCAGCGGCGTGCTTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATTGCTGGCGCCGGAGATGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATTGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTTTGTAGTGGCAGCGGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTCATCATCTTCTTCGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCAGCAAAGCGGCTTCTGTACATGGCTTTGACTTTCTCTGTATACGACGAGGAAGGTTGTGGTGCGACTTCGACGGAGGAAGCTACCAAAAAATTGGTTCTACAATTTCAATACGTGACAACAAGATTGGAAACTGCACTTTCAAATCTGCCGTACGACCACTTTTGTGTCTCAGACGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCAAACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAACTCGAGGTTCTGTAAAATGGATGATCAATAATGATGTCAAGAGTATTTCTAGTGTTGATGATGGAGATGTAGAGTCTCAGCATCATCCTCGGAACTGCAATTATCCGACTAGTTTCGATTCGGTGAATTCTTGTTTTGATGAGAGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGAGGTTAGGAAGCCTATTGAAGTTGACATTCCTGAAAACTTCTTGTGCCCCATTTCCTTTGAGTTGATGTTGGATCCCGTCATCTGCTCGACCGGACAGACATATGAAAGATCCAACGTACAAAATTGGATAGACAGAGGAAATAGAACATGTCCAAAAACTCAGGAGCAGCTCCAAACTCTGATCCTCACTCCAAATTTTCTAATGAGAAAACTGATAGCTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGATTAACCAGCAGGAAATTTAAGAAGTATAGATCCTTCGAAGACGACTGCCGAAGGACTCTGCCGATAAAAACTCTCGTTCGACACCTTTCATTCGGGTCAATTCAGGAGCAGAAAATAGCTGTAACCGAGATTCGAAAACTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATATTGTAACACAAGAGAATGCAATGTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCTGTTTCTTACATTTCCAAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCGTTAGCCGATGAGAACAAGGCAATAATCGGGGCTTCAGGTGTGATACCGGACCTGTTAGAAATTCTCGAGATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAGACCATTGTTGAAAATACTCTCTGATCCAAATGGATCTTTGGTTGATGATGCTCTCTATATAATGTCAGTTCTTTGCGGCCACCCAGAAGCGAAAGCTGCAATGGCGAATGCGAATACGCTGCTCGTATTGACCGATGTTCTGAAGATGGGATCCTCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACTAGGCTTGGCGCAATGGCGTCGTTGATGAAACTTGCGGAGAACGGCACGGGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAACAACTCAGAAAGTCATGAACAAGATTCAAATCAGTTTCTGCTGTGCTCTGAGAGCCTCAGTTCTTCTATGGCCTTCTTTTTCTTTTTGACATTTACATAAAAAACAATGTGAATAGTTTTATTTTTCTTTTGAGTTTATCATATTCAAGTCTGTTTTTGCTAGTTTATGCATTTTTTTTGTCTCAA 2094 43.94 MSREVVGDGQRRALALQLLDLVRDFVLMSGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSGENFEALNDDGSSSSSSSLDCLSEVVGAIQAAKRLLYMALTFSVYDEEGCGATSTEEATKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPAEKKLQTRGSVKWMINNDVKSISSVDDGDVESQHHPRNCNYPTSFDSVNSCFDESSSVVHSDMEDVLASKSQDEVRKPIEVDIPENFLCPISFELMLDPVICSTGQTYERSNVQNWIDRGNRTCPKTQEQLQTLILTPNFLMRKLIAEWCEEHNVKLEEGLTSRKFKKYRSFEDDCRRTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDIVTQENAMSCILNLSLHEQNKRLVMLSGAVSYISKVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEILEIGSPRGQKDAAGALLNLCMYQGNKGRALKAGIVRPLLKILSDPNGSLVDDALYIMSVLCGHPEAKAAMANANTLLVLTDVLKMGSSRSKENAAAVLLALCKGDWEKLEWLTRLGAMASLMKLAENGTGRARRKAASLLEQLRKS 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26656113 26660728 - XM_039019735.1 Bhi12g00879 52691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00879 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 347 IPR013083 -
Bhi12g00879 641 Gene3D - 362 480 IPR011989 -
Bhi12g00879 641 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Bhi12g00879 641 CDD RING-Ubox_PUB 270 312 IPR045210 -
Bhi12g00879 641 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Bhi12g00879 641 Pfam Armadillo/beta-catenin-like repeat 477 515 IPR000225 GO:0005515
Bhi12g00879 641 PANTHER U BOX DOMAIN-CONTAINING 21 640 - -
Bhi12g00879 641 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Bhi12g00879 641 Gene3D - 481 641 IPR011989 -
Bhi12g00879 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
Bhi12g00879 641 Coils Coil 156 176 - -
Bhi12g00879 641 SUPERFAMILY RING/U-box 261 339 - -
Bhi12g00879 641 Pfam U-box domain 266 337 IPR003613 GO:0004842|GO:0016567
Bhi12g00879 641 SUPERFAMILY ARM repeat 365 638 IPR016024 -
Bhi12g00879 641 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 21 640 - -
Bhi12g00879 641 SMART arm_5 435 475 IPR000225 GO:0005515
Bhi12g00879 641 SMART arm_5 558 598 IPR000225 GO:0005515
Bhi12g00879 641 SMART arm_5 476 516 IPR000225 GO:0005515
Bhi12g00879 641 SMART arm_5 517 557 IPR000225 GO:0005515
Bhi12g00879 641 SMART arm_5 394 434 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00339 Bhi-Chr7:14833207 Bhi12g00879 Bhi-Chr12:26656113 0 dispersed
Bhi10g00687 Bhi-Chr10:15015036 Bhi12g00879 Bhi-Chr12:26656113 3.92E-116 dispersed
Bhi10g00688 Bhi-Chr10:15015352 Bhi12g00879 Bhi-Chr12:26656113 3.92E-116 dispersed
Bhi12g00879 Bhi-Chr12:26656113 Bhi12g00881 Bhi-Chr12:26656113 0 dispersed
Bhi12g00878 Bhi-Chr12:26656113 Bhi12g00879 Bhi-Chr12:26656113 0 tandem
Bhi12g00879 Bhi-Chr12:26656113 Bhi12g00880 Bhi-Chr12:26656113 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00879 - - cmax:111489474 981.089