Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00880 AATAGAATCAACAACATTAATTGCATTTCCAGTACATCTCCTAATGGCCACGCAGTTTCAAGTGCTCTTCAACAATTCAACTGAGGATCTGTTGAATTCACCTACAAAAGTTGGTTATTCATATTCAACTCCTACTCACCAGGGAGGTCCATTGCTGGCGCCGGAGATGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATTGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTTTGTAGTGGCAGCGGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTCATCATCTTCTTCGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCAGCAAAGCGGCTTCTGTACATGGCTTTGACTTTCTCTGTATACGACGAGGAAGGTTGTGGTGCGACTTCGACGGAGGAAGCTACCAAAAAATTGGTTCTACAATTTCAATACGTGACAACAAGATTGGAAACTGCACTTTCAAATCTGCCGTACGACCACTTTTGTGTCTCAGACGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCAAACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAACTCGAGGTTCTGTAAAATGGATGATCAATAATGATGTCAAGAGTATTTCTAGTGTTGATGATGGAGATGTAGAGTCTCAGCATCATCCTCGGAACTGCAATTATCCGACTAGTTTCGATTCGGTGAATTCTTGTTTTGATGAGAGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTCTAGCCAGCAAGAGCCAAGATGAGGTTAGGAAGCCTATTGAAGTTGACATTCCTGAAAACTTCTTGTGCCCCATTTCCTTTGAGTTGATGTTGGATCCCGTCATCTGCTCGACCGGACAGACATATGAAAGATCCAACGTACAAAATTGGATAGACAGAGGAAATAGAACATGTCCAAAAACTCAGGAGCAGCTCCAAACTCTGATCCTCACTCCAAATTTTCTAATGAGAAAACTGATAGCTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGATTAACCAGCAGGAAATTTAAGAAGTATAGATCCTTCGAAGACGACTGCCGAAGGACTCTGCCGATAAAAACTCTCGTTCGACACCTTTCATTCGGGTCAATTCAGGAGCAGAAAATAGCTGTAACCGAGATTCGAAAACTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTGGTTAACCTTTTAACTTCAGAAGATATTGTAACACAAGAGAATGCAATGTCTTGCATTCTCAACCTTTCACTTCATGAGCAAAACAAGAGACTTGTTATGCTTTCTGGTGCTGTTTCTTACATTTCCAAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGCGACGATTTACAGCTTGTCGTTAGCCGATGAGAACAAGGCAATAATCGGGGCTTCAGGTGTGATACCGGACCTGTTAGAAATTCTCGAGATCGGTAGCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAGACCATTGTTGAAAATACTCTCTGATCCAAATGGATCTTTGGTTGATGATGCTCTCTATATAATGTCAGTTCTTTGCGGCCACCCAGAAGCGAAAGCTGCAATGGCGAATGCGAATACGCTGCTCGTATTGACCGATGTTCTGAAGATGGGATCCTCTCGCAGCAAGGAAAATGCAGCTGCAGTTCTGCTTGCATTGTGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACTAGGCTTGGCGCAATGGCGTCGTTGATGAAACTTGCGGAGAACGGCACGGGGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGAACAACTCAGAAAGTCATGAACAAGATTCAAATCAGTTTCTGCTGTGCTCTGAGAGCCTCAGTTCTTCTATGGCCTTCTTTTTCTTTTTGACATTTACATAAAAAACAATGTGAATAGTTTTATTTTTCTTTTGAGTTTATCATATTCAAGTCTGTTTTTGCTAGTTTATGCATTTTTTTTGTCTCAA 2148 43.16 MKKDCTDLIRRIALLIHLAEEITNFCSGSGENFEALNDDGSSSSSSSLDCLSEVVGAIQAAKRLLYMALTFSVYDEEGCGATSTEEATKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPAEKKLQTRGSVKWMINNDVKSISSVDDGDVESQHHPRNCNYPTSFDSVNSCFDESSSVVHSDMEDVLASKSQDEVRKPIEVDIPENFLCPISFELMLDPVICSTGQTYERSNVQNWIDRGNRTCPKTQEQLQTLILTPNFLMRKLIAEWCEEHNVKLEEGLTSRKFKKYRSFEDDCRRTLPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSEDIVTQENAMSCILNLSLHEQNKRLVMLSGAVSYISKVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEILEIGSPRGQKDAAGALLNLCMYQGNKGRALKAGIVRPLLKILSDPNGSLVDDALYIMSVLCGHPEAKAAMANANTLLVLTDVLKMGSSRSKENAAAVLLALCKGDWEKLEWLTRLGAMASLMKLAENGTGRARRKAASLLEQLRKS 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26656113 26661861 - XM_039019737.1 Bhi12g00880 52692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00880 602 Pfam Armadillo/beta-catenin-like repeat 438 476 IPR000225 GO:0005515
Bhi12g00880 602 Pfam Armadillo/beta-catenin-like repeat 355 394 IPR000225 GO:0005515
Bhi12g00880 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 308 IPR013083 -
Bhi12g00880 602 SUPERFAMILY RING/U-box 222 300 - -
Bhi12g00880 602 SMART Ubox_2 230 293 IPR003613 GO:0004842|GO:0016567
Bhi12g00880 602 Pfam U-box domain 227 298 IPR003613 GO:0004842|GO:0016567
Bhi12g00880 602 SUPERFAMILY ARM repeat 326 599 IPR016024 -
Bhi12g00880 602 Gene3D - 445 602 IPR011989 -
Bhi12g00880 602 SMART arm_5 519 559 IPR000225 GO:0005515
Bhi12g00880 602 SMART arm_5 478 518 IPR000225 GO:0005515
Bhi12g00880 602 SMART arm_5 355 395 IPR000225 GO:0005515
Bhi12g00880 602 SMART arm_5 437 477 IPR000225 GO:0005515
Bhi12g00880 602 SMART arm_5 396 436 IPR000225 GO:0005515
Bhi12g00880 602 Coils Coil 589 602 - -
Bhi12g00880 602 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Bhi12g00880 602 CDD RING-Ubox_PUB 231 273 IPR045210 -
Bhi12g00880 602 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 2 601 - -
Bhi12g00880 602 Gene3D - 325 444 IPR011989 -
Bhi12g00880 602 PANTHER U BOX DOMAIN-CONTAINING 2 601 - -
Bhi12g00880 602 ProSiteProfiles U-box domain profile. 226 300 IPR003613 GO:0004842|GO:0016567
Bhi12g00880 602 Coils Coil 117 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g00878 Bhi-Chr12:26656113 Bhi12g00880 Bhi-Chr12:26656113 0 dispersed
Bhi12g00879 Bhi-Chr12:26656113 Bhi12g00880 Bhi-Chr12:26656113 0 tandem
Bhi12g00880 Bhi-Chr12:26656113 Bhi12g00881 Bhi-Chr12:26656113 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00880 - - cmax:111489474 919.457