Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00933 TGTGTCACACCCAAAGGAAGTGACCGTCATATTTTCTTGGAAGAGAATTAAGAAGAAAGTGAAAAAGGATTGGATGGAAATGGGAGTCGTAAGCCTTCAGAAACCGCGTTGGGAGACGAAGAACAGCGTCAACCGCCAATAACAGCCTTCTTTCTTTCTGTGAGCTTTTGGGATCTCCAACGAGTCTGTAAAGACAAATCTTTCCCTAATCAGTGGATAAGTCTGTTCTTAATGATCGAGAGGAAAATTTTAGCTTATTTGCTGTAAATTGTATTCTTCTTCTTGCTTAATTCTTCGAAACGTAGTAAGTAATTGTTAGAGTTCTTTGTTTCTGATTGTGTTGTTTATCATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGTTGTCTTCTTCTTCTTCTTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGCCTTCTTCTGGGTCGACTAGTTCTATACCTACCCGCCCATTGCAGAATCCCAATTCAAAGCCGAAGCTGGTTAATCCACCTTCAGATTCCTCGGCAGATTCTAAGCCCCCGGTTGCGAATTCGATTGCCACTGATCAAAACAGGTCAGACCTGTCGAATAAATCGAATCCAGCTCGTAATCCGGCCGATGGATTTGACCCATTTGATTCGTTTATAACATCTGGGAAAAGATCGGGAAATGGGTATTCTTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGTCGATAGCTGTGTCAACGATGGTAAAGCCAAGGGATCAGAATATCTGCCTACGAGTGATGCAGAATCTCGGAGTGAATTGGAGGGTTGTGTTGGTACTTTCTTATCAGGGAAGCCATCACAAGGTTCGTTGGATATTGTTCTGAAGCTTTTGAGTAACATAGTTCGAGAACCAGAGAATTCAAAGTTTAGGAAGATACGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTAGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAGGAAGGGGGTGAAATGTGGGCAACCATGGATGTTCCAACAGAGGAAAAAATTAACATATTAAGTAAGGTAATAGATTCGATTGACCGTCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGAATCTGAGCTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACATTGCAGCACACATTGAATTGCCAGACTTCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCTAAATCATACAAGGAAAAACAGGCAAAAGCTGCTCGGAGGAAGTACACACGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCAACAAGCGCTCTGTATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGTTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAACGGCGTACAATCACTCATTTTCCTGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTCCCCTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCATTAACGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAAATTTATTTGGAACAATGGTGAATGTACATTTTGATGTTTGGCCGTTCTGGGTTGATGTAGTTGTTTCACTAAGTTCCCATTTACACTCTTGTTGCTCTTCTTTGTAATCTATTTTTCTTCTTAGATGTGAAAAGTCATTGCATTATTTCGAGTTTTAACACTTCTATACCTTTTTATGGGTAGTGGACAAAGCATTTTACTATTGAATTATCTTGCTAATA 1989 41.23 MGDVKDKVKGFMKRFNNTLSSSSSSSFKGQGRVLGSPSSGSTSSIPTRPLQNPNSKPKLVNPPSDSSADSKPPVANSIATDQNRSDLSNKSNPARNPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHVDSCVNDGKAKGSEYLPTSDAESRSELEGCVGTFLSGKPSQGSLDIVLKLLSNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEGGEMWATMDVPTEEKINILSKVIDSIDRPKLDEQQKKASTESELIEPKKVDRQIRVFFAVPENIAAHIELPDFFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVSTALKEPGLEFELIHPVGVKRRTITHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLINGSAVAPPAQV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28171478 28175596 - XM_039019943.1 Bhi12g00933 52745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00933 472 Gene3D - 177 266 - -
Bhi12g00933 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 152 IPR013087 -
Bhi12g00933 472 ProSiteProfiles UBX domain profile. 352 436 IPR001012 GO:0005515
Bhi12g00933 472 SUPERFAMILY Ubiquitin-like 323 436 IPR029071 -
Bhi12g00933 472 SMART ubx_3 349 438 IPR001012 GO:0005515
Bhi12g00933 472 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Bhi12g00933 472 Pfam UBX domain 353 432 IPR001012 GO:0005515
Bhi12g00933 472 CDD PUB 177 266 - -
Bhi12g00933 472 SMART PGNneu 183 250 - -
Bhi12g00933 472 Gene3D - 346 438 - -
Bhi12g00933 472 MobiDBLite consensus disorder prediction 16 95 - -
Bhi12g00933 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 461 - -
Bhi12g00933 472 CDD UBX_UBXN6 357 437 - -
Bhi12g00933 472 MobiDBLite consensus disorder prediction 16 103 - -
Bhi12g00933 472 SUPERFAMILY PUG domain-like 181 247 IPR036339 -
Bhi12g00933 472 Pfam PUB domain 182 248 IPR018997 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02397 Bhi-Chr4:65509723 Bhi12g00933 Bhi-Chr12:28171478 3.81E-08 dispersed
Bhi04g02398 Bhi-Chr4:65509882 Bhi12g00933 Bhi-Chr12:28171478 1.24E-06 dispersed
Bhi12g00933 Bhi-Chr12:28171478 Bhi12g01491 Bhi-Chr12:48241698 1.04E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2623 PF00789 UBX 3.20E-06 CL0072 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00933 K14011 - csv:101209321 822.002