Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00946 CTCAATAAGAAACAAAAAAACGGACTGAGACGGGGGAGAAGAACTAGGCAGCCTTGTACGGAACTCGTAATTTGGGATTGAATTTTTGCAACGAAGGAAGGGAACAATGGACATCAGACTCCCATGGAATGGAATGGATGATGATTCTTCCATTACTTTCTAGACCGACAAACCAGCTGAAGAAGAAGATTTTCCTTCTCAATCTATAACCCCATCTCCTTCAATCAATTCCGACTTTCTCCCACCCACTCTCCTTCTCGCCGCCGGCGCCGATCATGTCTTCCCCATCCTTCCCTCCTTCCATGGACCCTCCCGCCCAACAGATCCCTCTCTTACCCTCTCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCCATCGGCCCCCTCGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCAGCTCGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCTAAGCCTGTGGTAGCCCTTGACATTATGTGGAATTTAACTTTCGTTTTCGTTTCGCTGGGTGTGCTTATTCACTCCGCTGATGAAAAACCCAATACGCCAATTCGCCTTTGGATTGTAGTTTATGCGGCTCAGTGCTTGCTGCACACCGTGCTTGTGTGGTTTGAGTTCAGAAGGAGAAATGCGAGGAGGGCTAGGGATATGGAGACGCAGCAACAGCAGCAGCCTGACGGATATGTAACTAATGAAAGCGATGATGAAGATGGTAGCCACAGGAATCTGTCCGGTGTTGCAAAAAGATGTGAGTCAGTGAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTCGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCCGTCTTTTGTGTTGTTTTGGCATGTTTTATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACAGATGCTGATTTAAGTTTGCTTCCTAAGTATAGATATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGATTCCAGTAGAGACTAGCAGTAGATACTTGACGACTGAGCGTGTTCTATTACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCAATACGAGGACGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAACATTCTAAAAAATAGTGAACCCGTGTAATGCTGAAGATGAAACGATGCAGTGAGTTCCTGGTATGTTTGCCGTCCTTGTACATATAAATCAGATAGTGATCCTGCTGCATTGTGGTTGAAACATGTTACACTTTTTTTTTTCTTTTTGTCTTTTTTGATGGGGGGGAGTAATTAGTTCTCTAGGCCGTTGAAATTGTGTTCATGCTGGTCGATATCTGTTGTACTTAATCAGTCGACTCGTTTGATCTGTAGCAACAATTATGAATGTCTTTCCGGTCAATGTGCTCAGAATAACATTTATTATTCAACTTCTACCA 1632 46.2 MSSPSFPPSMDPPAQQIPLLPSRQPSNSDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDIMWNLTFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLLHTVLVWFEFRRRNARRARDMETQQQQQPDGYVTNESDDEDGSHRNLSGVAKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACFIGIALCCCLPCIIAILYAVAGQEGATDADLSLLPKYRYQVSNEPSPGDGLMIPVETSSRYLTTERVLLREDAECCICLSQYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28521866 28532028 - XM_039018823.1 Bhi12g00946 52758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00946 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Bhi12g00946 355 MobiDBLite consensus disorder prediction 1 19 - -
Bhi12g00946 355 Pfam Ring finger domain 303 345 IPR001841 -
Bhi12g00946 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 353 IPR013083 -
Bhi12g00946 355 SUPERFAMILY RING/U-box 290 350 - -
Bhi12g00946 355 CDD RING-H2_RNF111_like 303 347 - -
Bhi12g00946 355 PANTHER TARGET OF ERK KINASE MPK-1 15 352 - -
Bhi12g00946 355 SMART ring_2 304 344 IPR001841 -
Bhi12g00946 355 MobiDBLite consensus disorder prediction 138 163 - -
Bhi12g00946 355 MobiDBLite consensus disorder prediction 1 32 - -
Bhi12g00946 355 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 15 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00362 Bhi-Chr11:8666553 Bhi12g00946 Bhi-Chr12:28521866 4.84E-115 dispersed
Bhi11g02769 Bhi-Chr11:74033994 Bhi12g00946 Bhi-Chr12:28521866 1.36E-91 dispersed
Bhi12g00944 Bhi-Chr12:28521866 Bhi12g00946 Bhi-Chr12:28521866 0 dispersed
Bhi12g00946 Bhi-Chr12:28521866 Bhi12g00948 Bhi-Chr12:28522230 0 dispersed
Bhi12g00945 Bhi-Chr12:28521866 Bhi12g00946 Bhi-Chr12:28521866 0 tandem
Bhi12g00946 Bhi-Chr12:28521866 Bhi12g00947 Bhi-Chr12:28522202 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00946 - K13148 cmo:103504433 626.32