Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00959 TCCAAAAACGTTTCACCTTCCATTTTCTCACTTTCCCCTTTTCTTTTTATTTTCCCCTTCTTTTTTCATTATTATTATTATTACTATTATTATTATTATTCAGTTTTCACTTTGCAGCCGCTCATACAGTCTCTATTGCCTATTCGTGTTCTTTCCCTCTCTGATTTCTCTTCTCCCCTTCTCCTTTTCCCAATTTACTTGAAGAAATTTCCCACAATTTCAGTGTTTTTGTTCGATTTTTCATCGACCCAGAACTTGGGGTTCCTTCAAATTACATTTGGATATGGCAGGATGCAAGATTTATCTCAAGAAAAGGAAAACAGATTGGCTTAATTCCCTTTTGCAAAGCAAGTTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGGAAAAATGAAAAGAATGTGTTTTGTATAGACTGTGGTATTGCCATCTGCAGGCATTGCTTGATATCTCATTGCGTTCATCAGCGGTTACAGATCTGTAAGTATGTTTATCAGTACGTTGTTCGCGTGCCCGACTTGCAAAATCTCCTTGATTGTTGCAATATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATTTGAGCCCTCGTCCGCAATCAAAAGATTCGAAACCATCAACAAAATTGAAGTTCGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCAAACCGCTTCTGCTCGATCGCCTGCAAAGTCTCTATGGTTCCAGTTGAACTCAACAATCAAAACTGTAGATGCATTGATTCGGAGTCGAATCTCAAAGGCATTCCATGGACGGAGAACCATAATCTAGAAACCAATACAAGCGAAATGGAATCGTCGTCAATATCAGTGGCCGAATCAACTGAAGAGATTAAAGCATGGCGAGTGAAGACCGTCTTGAATCCAAAGAAGCTTTTGCATAAAAGGAAGGGCATTCCCCATCGATCCCATCTAAAGTAATGCCTAAATACTAATCTTGAAGATCTTCAATACCACATTTTTTTCATATATCAAAGTCCTATAAGCATATAAGTATAGATATATAATAACATATATTTCACCTCTTGGTTTTTTGGCTCTATATTGGATTAGTTATGTTTTAACTTCATTATTTTTTCTTGCCAATATTTTTTGGAGATTGTATAGAAAAGGAGAGATTTGCTTGTGGAAACAATAATCAAATAATCAACCCTTTTATCTTA 1203 36.33 MAGCKIYLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCVHQRLQICKYVYQYVVRVPDLQNLLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQNCRCIDSESNLKGIPWTENHNLETNTSEMESSSISVAESTEEIKAWRVKTVLNPKKLLHKRKGIPHRSHLK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29191964 29194076 + XM_039019297.1 Bhi12g00959 52771

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00959 225 Pfam PLATZ transcription factor 68 144 IPR006734 -
Bhi12g00959 225 ProSiteProfiles Zinc finger B-box type profile. 28 66 IPR000315 GO:0008270
Bhi12g00959 225 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 224 - -
Bhi12g00959 225 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 1 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00959 - - - csv:101210438 447.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00415 Bhi-Chr7:18621081 Bhi12g00959 Bhi-Chr12:29191964 1.56E-51 dispersed
Bhi12g00959 Bhi-Chr12:29191964 Bhi12g02124 Bhi-Chr12:66219631 1.08E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g526 . . . . Bpe13g01001 . . . . . . Cma04g00083 . Car04g00084 . Cpe09g00608 Cpe01g01855 . . . . . . . . . . . . . . . . . Cone9ag0379 . Csa05g01972 . . . . . . . . . Bma06g01137 . Cmo04g02230 . Cma04g02137 . Car04g02074 . . . Bhi12g00959 . . . Hepe02g2605 . Lcy10g1600 Cla01g00649 Cam01g0678 Cec01g0671 Cco01g0697 Clacu01g0666 Cmu01g0639 Cre09g1866 Lsi09g00702 Csa05g01125 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002993 1 2 0 1 1 2 3 2 2 0 2 2 2 1 2 2 2 1 3 2 2 1 2 2 2 2 2 3 3 1 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2627 PF04640 PLATZ 2.00E-24 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00959 Bhi_Chr12 FPKM 5.883261 7.627247 15.989556 16.565722 112.861168 111.100372 105.587456 7.715012 7.147858 6.778983