Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00960 TTATTGTAACAAGAGGTGATTATTATGATTTTAGGATAGTTTTTGCTCTAATCACCTTAATTGCAATTCGCGAACTTGGAAGGAAGGAAGGAAAATTGAGAATTCAAACAAAATTTAAAAAAGTAGTTAGTGGTAGTGCGCGACTTTGAATTTCACACTGTTCATAGTCTAATCTCTTTTGCTTTCAAAATGGTTTGATTTGACGAAATAATGAAACATCCCCATTGACCCATTCATTCTTCCCTTCATATATTTTAAATCTCCCCATTGTTCCCGGCTACCAAAGCTCTACGGAACGATGTTTTTCGCCGCCGCCCCTCTCTCTATTCTCCTCTTCTTCTTCACTTCTCCTCCGTCTCTGGCTGCCGCTCAACCGACGGCAAACCCCCGCAATTTCTCCGCCTTCTCAATATCCCAATCCCCATGGCGGCCCACTCAGAATCTCATTCTCCTCTCCCCCAACTCCCATTTCGCCGCCGGCTTCCGCCCACTACCCAACAACTCCAATCTCTTCATCTTCTCCGTTTGGTACTTCAACATCTCAATAGACAACGTCGTGTGGTCCGCCAACCGTCTTTCTCCGGTCAACCGTTCTGCAGCTCTGGTCATCACAGCCACGGGCCAGCTCCGTCTCAATGACGGCTCCGGTCGCAACCTCTGGCCTTCCAACCATGTTTCTGCGAATCCAAACTTGACAAAATTAATCCTTCGCAACGATGGTGATTTGATTTACGGGACATGGGAGAGCTTCCGATTCCCCACCAATACTATCTTGCCTAATCAGACATTGAATGGAACCACCATCGTCTCCAACAACGGCAAATATTCGTTTGTGAACTCTGTTAATTTGACGTTTGGTACAGAGAGGTACTGGACCTCTGGAAATCCCTTCCAGACTTTCCTAATTGGAGGTCAAATCATCATAAACAATCAAATCCCAGTTACCCCTTCTGATTTTAACTCGACCCGCCTCCGGAAATTGATTGTTGACGACGATGGGAACCTCAAGATTTTCAGCTTCAACCCCAATTCTTCGCGGTGGGATGTGGTTTGGCAAGCACATGTAGAGTTGTGTCAAATCTTTGATACTTGTGGCCCAAATTCTGTCTGTATGAGTAGTGGCAGTTACAATTCCACTTACTGTGTCTGCGCTCCCGGATTCAGCCCCGATTCTCGCGGCGGAGCACGGCGAGGATGCCACCGGAAACTCAACGTATCGAACAAACCCAAGTTTCTTCAACTGGATTTTGTGAGTTTCAGAGGTGGGGCTAAACAAATCTCCCTGCAAACCCCAAATATTTCAGTCTGTCAAGCAGATTGCTTAAAGAATTCGAGCTGCGTGGGTTATACATTCAGCTTCGACGGCAGCGCCCAGTGTGTGCTTCAGCTAGACATTTTGTCAAACGGGTTGTGGTCGCCAGGGATGAAGACAGCTGCCTTCGTGAAGGTCGACAATTCTGAAACAGATCAGTCAAATTTCACCGGAATGATGTACAAACTCCAAACCACATGTCCAGTTCGCATCACCCTCCGGCCACCACCTGTAAATAAAGACAACACCACCAGAAACATATTGATAATCAGCACCATATTCGTTGCCGAACTAATTACCGGGGCAGTTTTCTTCTATGCATTCTTGAAGAGATTTATAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGCCCAAAGCGGTTCAACTACGCCGAGCTAAAAACGGCCACAAACGACTTCTCGAACTGCATCGGAAAGGGCGGATTCGGCAAAGTCTTCAAAGGGGAGCTGCCAGACAAACGCGTGGTCGCCGTCAAGTGCTTGAAAAACGTCGCCGGCGGTGACCGCGACTTTTGGGCGGAGGTCACCATCATCGCCAGGATGCACCATCTCAACTTGCTTCGATTGTGGGGATTCTGCGCAGAAAAGGGCCAGAGAATGTTAGTATACGAGCATATCCCCAATGGATCGCTCGACAAATTCCTCTTCGTGAAAGCTTCACCTTCCGATTCCGAGAAAGACGGAACAGAGACGGAAGAACAAAGCCCATCGCTGGATTGGAGCATCCGTTACCGAATCGCCATTGGAGTCGCGAGAGCAATCGCGTACTTGCACGAGGAATGCCTAGAATGGGTGTTACATCGAGACATAAAACCAGAGAACATCCTTCTTGATAACGATTTCTGCCCGAAACTATCAGATTTCGGGCTGTCGAAACTGAGGAAAAACGAGGAGACGGCGGTGAGTATGTCTCGGATCAGAGGGACGCCCGGTTACGTGGCGCCGGAGCTGGTGAAATTGGGTTCGAATTCGATCACGACGAAGGCGGATGTGTACAGTTTCGGAATGGTGCTGCTGGAGATAATCAGTGGGACGAGGAATTTCGAGATAAAGAGATCGACGGTGGAGAGCGCGGATTGGTACTTCCCAGGATGGGCGTTTGAGAAGGCGTTCGTGGAGGAGAAGATGAAGGAGATTTTAGACGTTCGGTTAAGGGATGAATACGAGAGTGGAGCTCATTTCGCCATTATTAATCGAATGGTGCAGACGGCGATGTGGTGTCTTCAAAGCCAACCGGAGAAGAGACCGTCGATGGGGAAGGTGGTGAAGATGTTGGAAGGGAAGCTTGAAATTCCTCCTCCACAAAAGCCTTCTATTTACTTCTTGTCTGAACCTTAGAAAATTATTTTCATTAACCCTTCCAAATTTTAGTTAATTTTACACCTTAAATGGGTAAAATTGTAAATTGATCATTTTCAAAGGACCTATGAAACACAAAGTTATAGCCAACCTTTAAAAGGTGGATGCCAA 2824 47.34 MFFAAAPLSILLFFFTSPPSLAAAQPTANPRNFSAFSISQSPWRPTQNLILLSPNSHFAAGFRPLPNNSNLFIFSVWYFNISIDNVVWSANRLSPVNRSAALVITATGQLRLNDGSGRNLWPSNHVSANPNLTKLILRNDGDLIYGTWESFRFPTNTILPNQTLNGTTIVSNNGKYSFVNSVNLTFGTERYWTSGNPFQTFLIGGQIIINNQIPVTPSDFNSTRLRKLIVDDDGNLKIFSFNPNSSRWDVVWQAHVELCQIFDTCGPNSVCMSSGSYNSTYCVCAPGFSPDSRGGARRGCHRKLNVSNKPKFLQLDFVSFRGGAKQISLQTPNISVCQADCLKNSSCVGYTFSFDGSAQCVLQLDILSNGLWSPGMKTAAFVKVDNSETDQSNFTGMMYKLQTTCPVRITLRPPPVNKDNTTRNILIISTIFVAELITGAVFFYAFLKRFIKYRDMARTLGLESLPAGGPKRFNYAELKTATNDFSNCIGKGGFGKVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRMLVYEHIPNGSLDKFLFVKASPSDSEKDGTETEEQSPSLDWSIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNEETAVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNFEIKRSTVESADWYFPGWAFEKAFVEEKMKEILDVRLRDEYESGAHFAIINRMVQTAMWCLQSQPEKRPSMGKVVKMLEGKLEIPPPQKPSIYFLSEP 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29201631 29204454 - XM_039019311.1 Bhi12g00960 52772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00960 797 SUPERFAMILY Protein kinase-like (PK-like) 466 778 IPR011009 -
Bhi12g00960 797 CDD B_lectin 51 154 IPR001480 -
Bhi12g00960 797 ProSiteProfiles Protein kinase domain profile. 483 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00960 797 SMART serkin_6 483 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00960 797 Gene3D - 43 157 IPR036426 -
Bhi12g00960 797 SMART blect_4 47 154 IPR001480 -
Bhi12g00960 797 Pfam D-mannose binding lectin 86 165 IPR001480 -
Bhi12g00960 797 PANTHER OS10G0101000 PROTEIN 13 796 - -
Bhi12g00960 797 Pfam S-locus glycoprotein domain 213 291 IPR000858 GO:0048544
Bhi12g00960 797 ProSiteProfiles Bulb-type lectin domain profile. 36 158 IPR001480 -
Bhi12g00960 797 PIRSF SRK 2 797 IPR024171 GO:0004674
Bhi12g00960 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Bhi12g00960 797 ProSiteProfiles PAN/Apple domain profile. 300 386 IPR003609 -
Bhi12g00960 797 Pfam Protein kinase domain 488 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g00960 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 196 IPR036426 -
Bhi12g00960 797 ProSiteProfiles EGF-like domain profile. 255 294 IPR000742 -
Bhi12g00960 797 CDD STKc_IRAK 489 779 - -
Bhi12g00960 797 PANTHER OS07G0415500 PROTEIN 13 796 - -
Bhi12g00960 797 ProSitePatterns Protein kinases ATP-binding region signature. 489 511 IPR017441 GO:0005524
Bhi12g00960 797 Gene3D Phosphorylase Kinase; domain 1 454 557 - -
Bhi12g00960 797 Gene3D Transferase(Phosphotransferase) domain 1 558 783 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00960 - - - csv:101221701 1447.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g01927 Bhi-Chr11:55026661 Bhi12g00960 Bhi-Chr12:29201631 1.27E-106 dispersed
Bhi12g00960 Bhi-Chr12:29201631 Bhi04g01630 Bhi-Chr4:40527584 2.13E-112 dispersed
Bhi12g00958 Bhi-Chr12:29075177 Bhi12g00960 Bhi-Chr12:29201631 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88500 PF00069 Pkinase 1.10E-45 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00960 Bhi_Chr12 FPKM 30.578238 31.280037 34.202065 34.284058 37.175983 26.511267 36.985081 46.76482 46.522518 47.538033