Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g00970 TCCGAAGAAAGAAAAATCCACCAAAAATAAAGAAAGGAGAGAGAAATGTGTGTGTAATTCAGAACAAGTCAAGGGGTATTTCCGTAATCCCGAATTTCAAGAGCAAAACCAGTCATCGTCATCGTATGAAAAGGCTTGACAATTTGGCTCTTCCCGTTGCAAACGACTGTAAATCACTCAACAAAGGGGAAAGAGAAGAAAGAAATAAACAACAAACCCATTTTCCAGATTCAACCCCCAATTTCCCCTTTTCACTATTCCCATCACCTGATTTTAAGGCATGTTCGAGGCCAAGGATCTCGCCTCCGATGGCGAGGATTCTCGGACCAAGCTTTTGCGCCATGTCAGAGAGAATTCCGATGTCAAATCTGGGTTTTCCGACAAGGGTATTGTTGGTTTCCGGGAGGAACAGTCAAAATCTGCTAGAATCGGGAATTCGGGTTCTCAAGAACTCACTCTTAGCTACCTCTGTGACAAGGACAAGGGTTTTACGCCTTCCTTCGAGAAAGGTAATTACAAAGGTAAGGAAGTTTTGTTTTCTGAGAATTCTAACGAAGATGATAAATGGGTTGAAAGGGATTTCCTTAATTTGAACTCCAATAGGGGAAATCAATCGAAGCGGGAGGTTGAGGATGAGATGGAAAGGGAGAATAATCGGGGAAAGAAACCCAAGCTTGAAACTCTCAATCTTTCTTTAGCTTTGCCTGAAGTTTCACTTTCTCTTACTGCTTCAAATGCTTTGCAAAATGAAGATCCTCCCCCTGCTCGATCCAAGCCTTGTAGGAGCCTCCAATCTTTGGCCCCTTCAATGAACAACACCCAAACTACTTGCTCTAATGATTTCACTGCTGCTTCGCTTTCCTATTCCTACTCCCACCAATTTTCTCACAACCCCAGTTGCTCGTTGACGAGAAATTCGACTGAGAATTACGAGTATTCGGTTGGGAGAGACGACCATATTTGGAACTGTGGAGAGGGAACTAATGGGTCTGTTCATAGCAGGTTTAAACCATTAGGGGATGGAGTTGCTTTGTCAAATCATGGAGGTGGGCTGAATTCTTTGTTGCACGGGAATCGTCCTTCAAATAAGGAGATATGTAATAACTCCGATGAACATTCATTTTTTCCGTCGGAGCTTCCGGCAAGACTGAGAACAGAGGTGAAATCGGGGAATTCGATTGGAAGGGGATCAGAAAATTTGAAGGGGGTTGAGGGTATTGCTAGGCCGGAGAGAATTCTTTGCGAAATCGTCTCAGAGTCGATCTCTATCATGTCTCAGATAGTTCAGGAGCTTCCTGATGAAACACTTTCATCAATCAAAGATTACTTGAAAGATCTGATTGCTATGCCTGACAAGAGAGATGAATTATCGTCTCTCCAAAAGCGGTTAGAGCGAAGGTCTGATCTAACTAAGGAAACTCTTTCAAAGTGTCACAAAGCACAGCTTGAAATTCTAGTTTCAGTGAAGATGGGGCTAGCAAGTTTCATATCAGCGAAAAGTAGGTGTTCCATTGCTGAGCTTGTGGACATTTTCTTGTTTCTGAAATGCAGGAGCTGCAAGAATGTAATCCCAGTTGATGATTGTGACTGTAAAATCTGCTCAGCCAACAAGGGATTTTGCAGCTCATGTATGTGCCCCATTTGTTTGAACTTTGATTGTGCAAACAATACTTGTAGTTGGGTTGGTTGTGATGTCTGCTCTCATTGGTGCCATGCTGCCTGTGGGATTGAGAAGAATCTCATCCGGCCTGGTCCGAGTCTCAAAGGTCAATCGGGGATGACAGAGATGCAGTTCCATTGCATTGCTTGTAATCATGCTTCAGAGATGTTTGGATTTGTGAAGGATGTTTTTGTATGCTGTGCAAGGAACTGGGGTCTAGAAACCTTGATGAAGGAGCTTGAGTGGGTAAAGAGGATCTTCATTGGAAGTGATGACTACAAAGGCAAGGATTTGTATATTAAAGCTGCTCAGATGCTGGCCAAGCTTGAAAGGAAAGCAATTGCTCCTCGGGAGGCCTGCAATATCATTCTTGAATACTTCAATTATGGTACATCGGAGATTTCAACTTCTGGGGTATTCTCAGAGAAGTTAGGAACAACCGATACGACCAGCCTGTCGAAAGATGGGATGTCTCTTCCTCAAACGGGTTCCCTACCTTCAACATACATCATGCAGAAAAACACCCCATCTAAGCCACATCGTGACTTAATCTCTGGCGATCTTCGACGGAACGATCTCAAAGTCTCCATTGCCAGTGACTTAAATGTAGACGACGAGTTCCAATTTGGGGTGTTGACAAAGAAAGAGGGCCTCGAGAGCTTGGAAAGCATTGTAAGAATCAAGAAAGCAGAGGCAGGAATGTTCCAGAACAAGGCAGATGAGGCACGGAGGGAGGCCGAACGGCTGAGACAAATAATCATTGCAAAGACAGAGAAACTCGACGAGGACTATGCCGAAAAGATCGGGAAATTGTGCTTGAAAGAGGCGGAAGATAGGCGTAGGAAGAAGGTGGAGGAGCTGAAGGTATTGGAGAATTCTCAAATAGATTATTACAACATGAAGAAGAGAATGCAGAAGGAGATATCTGGGTTATTGGAAAGGATGGAAGTGACAAAAAAGCAAGTAGTGTGAAGGTGACTGGGGATGTTCTATTTCTAACTTGATTTTTGTGGAGGTTTAGCAATAATGTTGACTGTTTTAATGATTATATTACAATGGGTTGTGTTTGTTTATTATTTAAGATCAAAAGAGGCAGTGATTGGGAAGCTCAATCCTGATTGAAACCATTATCTCTCTTGTCAAAGTTACCAGATTTTTCTCATTCTTTTAAACCCTTTTTCTTTTCTGTACCTGCTTTAGCATAAATGTAAAGTCTTACAACCCTTCCTC 2890 42.73 MFEAKDLASDGEDSRTKLLRHVRENSDVKSGFSDKGIVGFREEQSKSARIGNSGSQELTLSYLCDKDKGFTPSFEKGNYKGKEVLFSENSNEDDKWVERDFLNLNSNRGNQSKREVEDEMERENNRGKKPKLETLNLSLALPEVSLSLTASNALQNEDPPPARSKPCRSLQSLAPSMNNTQTTCSNDFTAASLSYSYSHQFSHNPSCSLTRNSTENYEYSVGRDDHIWNCGEGTNGSVHSRFKPLGDGVALSNHGGGLNSLLHGNRPSNKEICNNSDEHSFFPSELPARLRTEVKSGNSIGRGSENLKGVEGIARPERILCEIVSESISIMSQIVQELPDETLSSIKDYLKDLIAMPDKRDELSSLQKRLERRSDLTKETLSKCHKAQLEILVSVKMGLASFISAKSRCSIAELVDIFLFLKCRSCKNVIPVDDCDCKICSANKGFCSSCMCPICLNFDCANNTCSWVGCDVCSHWCHAACGIEKNLIRPGPSLKGQSGMTEMQFHCIACNHASEMFGFVKDVFVCCARNWGLETLMKELEWVKRIFIGSDDYKGKDLYIKAAQMLAKLERKAIAPREACNIILEYFNYGTSEISTSGVFSEKLGTTDTTSLSKDGMSLPQTGSLPSTYIMQKNTPSKPHRDLISGDLRRNDLKVSIASDLNVDDEFQFGVLTKKEGLESLESIVRIKKAEAGMFQNKADEARREAERLRQIIIAKTEKLDEDYAEKIGKLCLKEAEDRRRKKVEELKVLENSQIDYYNMKKRMQKEISGLLERMEVTKKQVV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29460368 29464428 + XM_039051279.1 Bhi12g00970 52782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g00970 783 MobiDBLite consensus disorder prediction 111 130 - -
Bhi12g00970 783 CDD PHD_OBE1_like 451 510 - -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 334 356 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 373 388 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 388 403 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 414 435 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 458 478 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 531 550 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 679 699 IPR004082 -
Bhi12g00970 783 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 718 740 IPR004082 -
Bhi12g00970 783 Coils Coil 761 781 - -
Bhi12g00970 783 Coils Coil 692 719 - -
Bhi12g00970 783 Coils Coil 733 753 - -
Bhi12g00970 783 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 782 IPR004082 -
Bhi12g00970 783 Pfam PHD - plant homeodomain finger protein 424 544 IPR032881 -
Bhi12g00970 783 MobiDBLite consensus disorder prediction 106 131 - -
Bhi12g00970 783 Pfam Coiled-coil region of Oberon 652 772 IPR032535 -
Bhi12g00970 783 PANTHER PROTEIN OBERON 3 1 782 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g00970 - - - csv:101209125 1427.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00659 Bhi-Chr9:14196367 Bhi12g00970 Bhi-Chr12:29460368 7.14E-131 dispersed
Bhi10g01317 Bhi-Chr10:31572918 Bhi12g00970 Bhi-Chr12:29460368 2.49E-86 dispersed
Bhi12g00970 Bhi-Chr12:29460368 Bhi05g01447 Bhi-Chr5:50624802 1.13E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g00970 Bhi_Chr12 FPKM 18.446062 20.575897 15.601609 16.465414 28.770504 24.196222 27.451908 31.214106 29.917702 31.379547