Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01016 TTTAAAAGGTCCCCAAAAAGAAGAAGAAGAAGAAAAAAAAAAAAAAAAAAGCTAAGGTGGAGAGTCCACAATAATTGGCATCAAATGCTTATGGGGATTCGCACTGTTGCTGAATTCCAAGATCTGCAGCAACGTATCCATTATTTATTTGAAAATAAGAAACCCCTCTTCTTCTTTCTCTCTCTCTTGCTTTAATTTTGTTTAAAAATTTGAGCTTTTTTTCCATTGGTGGAGGTTTGAGAGGATTGAAATTGAATGACCCAAATGACCCGGGGGGTAGAGATTTGTGAGTGCGTTGGATGTTGGTGGCTCAGAAAGGCTACCAATTTCAATAGTTATGAGTAATTTGTATCTGTATTTCTAGCTGTAACTGTAGCTGTAGAATCCAATTCAAGGGCTTCTCTCTCTCTACGTTTTGTAAAATGGATTTCGTAAAAGAATATTAAAGCTTTGTTGTATTGCCAAACCCAAAGCCAATCAGGGCTTCGTCGGAAAGTTGCGCCCAAAAAGGGCTTCTGTCTTCTGCCATTTCGATCGTTACCCAGATGAAATCATCGTTGGATATGCTTCAGCTGAGATTCCTGTGAGAGTTACTGTAAATAAGAGGATTGGTAATCATGGCAGCAGAATCCAACACAGGGTTTCACCGCGACGAAACGTTAAGTTCCGCTTTGAATAGGCACGCTATATCGTTTCAGTCTACTGCAACAACTAGCAGCTCAGAGATGATGACAATGGGGAACTATTTTGGGGTCAACAATGCGTCGGCCATAATGTTTTCGGGGAATTCAAGTGTCGTCAACAATAACAACAACCATCCTGTTATAAGCCAAGCTACCAATTCATCTGGTTCTCTGCTTCTTGATACGGTGCCAGGGCTCAAGCATGATGCGGGTTTGGCAGTTGAATGGTCTGTGGAAGAGCAATTCAAATTGGAGGAAGGTCTTGTCATGTTTGCTGATGAACCAAGCATTTTGAGGTATATCAAGATTGCTGCCACGTTACGTGATAAAACTGTCCGGGATGTTGCTTTAAGGTGTAGGTGGATGACTAGAAAACGAAGAAAGCCTGAAGAACATATTGGAAAGAAAGTGAACAATCGAAAGGATAAGCTGGTGGAGCCATCGTTAAAAATAAACACACCTTCAGCCCCTGGCCCCAGCATGGCTGGATATTCACATATGATGCATCATATGAACCGAAAAGAAGGTATGCCTTCCGAAGTCTCAGAGATTAGCAGTGCAGCTGCGCATCTTCTGGAACAGAATGCTCAAGCTTTTAGTCAAATTAGTTCCAACCTTTCCATGTACAAGTTGCAGGATAACATTGATCTTTTCTGCCGGACAAGGAATAATATTGTTGCTATCCTAAATGACATGAGGGACACTCCAGGCATTATGAGCAAAATGTTACCACTTCCTGTATCTATAAATGAAGATCTTGCAAATAGAATCTTACCTAGTACAACCTGATTTGGATTGGCTCCATTCTTTTGGCCCTTGGTTGTGTTTTATGCCTACACCAAGGCCACTGCAAAGAAATACAGACAAGAAGAAGATGACGACGACGATGACGACAATGATGATGTACGGCTGATTGGTCGGTTAGCCCCTGCTGTCCCTCCTTGCTGCCCAATCAGACAAAATCAAATTGATGGCTGAGAAAAAAATGAGTGTTTGATCTTGATGTCATGTCCATGAGCAGCTCCCCCAGCACACAAAATATTAACAGGGAAGTAAAAGTGTCAGCTGCAGATATATTGGTTGGGAGATTTGAGTCAAAAGGGAGAAAATGAGAGAAAAGGGAAAGAAAAATATATTGGATCTGCTGCTTCCAATTTGTACTATTTTAGGCATTTACCTAAAAAAAATAAAATTGTTGTGCAAAAATATTTGATATGAAAGTATAGTTGGATTGGGAGGAGCTGAAAATCATTCTGTTACCATTAATTGCATTTCTGTAGTTATCTGTTTGTTTGAGGCTAATTTGGTCAATTGGGTGACATGACAATTGAAAAATAGACCTACCTTA 2031 40.32 MAAESNTGFHRDETLSSALNRHAISFQSTATTSSSEMMTMGNYFGVNNASAIMFSGNSSVVNNNNNHPVISQATNSSGSLLLDTVPGLKHDAGLAVEWSVEEQFKLEEGLVMFADEPSILRYIKIAATLRDKTVRDVALRCRWMTRKRRKPEEHIGKKVNNRKDKLVEPSLKINTPSAPGPSMAGYSHMMHHMNRKEGMPSEVSEISSAAAHLLEQNAQAFSQISSNLSMYKLQDNIDLFCRTRNNIVAILNDMRDTPGIMSKMLPLPVSINEDLANRILPSTT 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30919002 30924429 - XM_039019676.1 Bhi12g01016 52828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01016 284 Pfam Protein of unknown function (DUF3755) 230 263 IPR022228 -
Bhi12g01016 284 PANTHER TRANSCRIPTION FACTOR SUPERFAMILY PROTEIN, PUTATIVE-RELATED 1 283 - -
Bhi12g01016 284 PANTHER FINGER CCCH DOMAIN PROTEIN, PUTATIVE (DUF3755)-RELATED 1 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01016 - - - csv:101213463 531.946
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01014 Bhi-Chr12:30919002 Bhi12g01016 Bhi-Chr12:30919002 0 dispersed
Bhi12g01015 Bhi-Chr12:30919002 Bhi12g01016 Bhi-Chr12:30919002 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1067 . . Bda01g01783 . . . . . . . . . . . . . Cpe01g01881 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01960 . Bma06g00591 . Cmo04g02270 . Cma04g02171 . Car04g02100 . . . Bhi12g01016 . . . . . . Cla01g00691 . . . . . Cre09g1825 Lsi09g00749 Csa05g01326 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002750 1 4 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 1 1 0 1 1 1 1 1 20 7 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g01016 Bhi_Chr12 FPKM 9.302231 10.007581 13.272036 12.700253 8.434191 8.663246 8.427805 9.514201 10.284975 9.910557