Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01178 TGTTCCCAAACACACTCCCAAACCCCCAATTCAGCTAAATTTAATTCCCAAAAAAATATTTATAAAATTTAAATTAAAATTCCTCAATCCTCCATAGACACCCCTTCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTCTCTCTCTTAACCATGTCTGGTTCTGATGGTGTTAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCAACACCAAATACAGGGGAATCAGTCCACCAACAATGGCGCTTTGGTCGTCAGAAAACCTCCGTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGTCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTTCAACTCACCCGCGAATTGGGTCATAAATCCGACGGCCAGACTATCGAATGGCTTCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACTATCTCCGCCTCACTCCGAGGCACTCCTGCCGTTGCTTCCTCTTCTTCTTCCTCTCTCGACCATAAACCCCTTTTAGCTCCGGCGCCCTTCATTTTAGGTAAACGTGTCAGAACCGATGACGATGGAGCTAATAAAGACGACAGCGGCGGCGGTGGCATTTCGGTCGGCCCCACTATTGGTTCGATTATGGGTCCGGCTGCCACAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTTGGACAGGTGTGGAGCTTTGCGGCGGCGGCAGCTCCGGAGATGGTGATTCAGCCAACCGCCGTTTCTCATCAAGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCAGGAAGTTCCGGACGAAGAGACAACGACCACCATTGATTTCGTAATCCGGCCGCCGTTCACGACGGCGTTGTAATAATTCTGTCCCTCTGATCTTGTGGGTGTTCGTGTTCATAGAATATATAACAACCACCCTCTTTATCGTTTTCTTTTTCCCCTTTTCGTGTGGAGCTTTAGACCATTTTAGGGTTTTAGGCTATTGAATTCTTAGCTTGGAATGAGTGAATTTTTAGGGTTTTCGTCTCTCTTTTGGAAGATTGATTAGGGTTTTTAACCTTCAAAAAAGGGTGTGGCTGTTTTCCCCAGATTTTGCAACAACCGTGTTAATTTGGGTGAATTTATTTCTCCATTTCAATGGAAATCCATGGAGGAATTGAGCTGATGGCTTTCTCTTTATCCCCTTTTTCCTTTGAAATTTTGGGTTTGTTCTGTAATACTTTCACAAACAAGAAAATTAGTGTTCTTCTTCTTCTTC 1384 47.47 MSGSDGVNNNNGAIIDHSQQQRHQHQIQGNQSTNNGALVVRKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGTPAVASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDSGGGGISVGPTIGSIMGPAATGGYWAIPARSDFGQVWSFAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHH 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34894260 34895643 - XM_039020382.1 Bhi12g01178 52990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01178 262 MobiDBLite consensus disorder prediction 147 167 - -
Bhi12g01178 262 MobiDBLite consensus disorder prediction 42 57 - -
Bhi12g01178 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 259 IPR005333 GO:0003700
Bhi12g01178 262 MobiDBLite consensus disorder prediction 18 39 - -
Bhi12g01178 262 ProSiteProfiles TCP domain profile. 45 99 IPR017887 -
Bhi12g01178 262 MobiDBLite consensus disorder prediction 18 57 - -
Bhi12g01178 262 Pfam TCP family transcription factor 45 129 IPR017887 -
Bhi12g01178 262 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01178 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101214586 416.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g01106 Bhi-Chr7:34862439 Bhi12g01178 Bhi-Chr12:34894260 1.31E-105 dispersed
Bhi12g01178 Bhi-Chr12:34894260 Bhi12g02424 Bhi-Chr12:76496895 4.83E-33 dispersed
Bhi12g01178 Bhi-Chr12:34894260 Bhi07g01576 Bhi-Chr7:45137800 4.28E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01178 . 43 260 TCP Transcription Factor Family AT5G23280 64.0 7.9e-66 248.1
Bhi07g01106 . 39 261 TCP Transcription Factor Family AT5G23280 62.4 2.3e-65 246.5
Bhi07g01576 . 57 156 TCP Transcription Factor Family AT3G47620 89.2 8.3e-43 172.6
Bhi08g02014 . 38 138 TCP Transcription Factor Family AT3G47620 82.2 2.5e-39 161.0
Bhi01g02112 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02113 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02114 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi12g02424 . 26 254 TCP Transcription Factor Family AT3G27010 52.4 7.4e-53 205.3
Bhi12g01178 . 31 261 TCP Transcription Factor Family AT5G08330 60.9 1.1e-64 244.2
Bhi07g01106 . 9 259 TCP Transcription Factor Family AT5G08330 56.8 1.4e-64 243.8
Bhi02g00091 CCT 35 136 TCP Transcription Factor Family AT5G60970 73.8 7.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2656 PF03634 TCP 4.90E-32 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g01178 Bhi_Chr12 FPKM 26.623669 28.881704 20.074949 21.029392 20.84778 20.742218 20.504461 24.661976 21.79664 23.497282