Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01185 TGAAATAAGAAGAAAGAGAGAGAAACTCTTGATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCTCTCTCGTTTTCAGTTGATACTTCTTCAACAGCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCTTTACCTGTTCAAGGCTCCGCTTCTTCTCTATGGAATCGTCTTCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAACCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCCCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGGCGGCAGATCGAGGAATTGGAGAAGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTTCCCGTTGATTCTTATCTTACTAGGTTTGTGTGGGATGAAGCCAAATACCCAACAATGTCGCCTCTGAAAGACATTGTAGATAGCATTCACAGCCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGGAAGCAAAGTGGAAGCTTGGCTGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTTGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGGAAACAGGAGTTAGAGAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCTTATGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTTTGTGCCGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCGCCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATAGCTGGTCTTGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGCTTAATTCATCAAAGTTCTGAAGGTTTGTTTTGTTCTCTATAGAGCAATAATAGTGGAGTTGACCAGACCCTACATTCAATTATTTCACTGTCATATTCCTATTTGTGGTTGTTTATGAAATAATTCCATCTCAAGTTGTCCATGTGAGGGTTTTGTGAAATATATGAAGCTTACATATTTATTGGAGGATTTGTCAATAATCTTACATTCTGAGAATTACTGTGAGAGGACTTCAGCATTTTTGGAAAGGTACGACATTCGGTACTGAACAAAATTACTACGATGTACAACCTATAGAACAGATCTTGTTCAAGTGAAGTCGTTGCTTCATGTTTGATTTTATTGCACTGCTATGTTGTTTTTCATGGTGATTCTGCCATGGTAGCCATTTATTGCAAGAGTTCAGAAATATAATAAA 1659 40.51 MASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLKDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGIAGLGGDSDAHPYVSFTINLA 376
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 35271461 35276867 - XM_039050571.1 Bhi12g01185 52997

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01185 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Bhi12g01185 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bhi12g01185 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
Bhi12g01185 376 Gene3D - 41 312 - -
Bhi12g01185 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bhi12g01185 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Bhi12g01185 376 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Bhi12g01185 376 Gene3D - 163 251 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01185 K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C - csv:101221574 714.916
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi05g01790 . 6 818 Primary Pumps ATPases(2) AT2G21410 76.0 0.0e+00 1234.9
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1204.9
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT2G21410 71.7 0.0e+00 1156.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT2G21410 71.8 0.0e+00 1154.4
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT2G21410 62.3 1.3e-298 1023.1
Bhi05g01790 . 8 818 Primary Pumps ATPases(2) AT4G39080 77.2 0.0e+00 1238.0
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1198.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1150.6
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT4G39080 71.8 0.0e+00 1147.5
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT4G39080 63.4 2.4e-297 1018.8
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00232 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi04g00233 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi09g02673 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.9e-66 248.4
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 8.4e-53 203.8
Bhi04g00232 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00233 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g01015 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 6.3e-70 261.5
Bhi09g02278 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 3.1e-69 259.2
Bhi09g02277 . 4 198 Primary Pumps ATPases(2) AT2G25610 73.8 7.2e-66 248.1
Bhi09g02279 . 4 137 Primary Pumps ATPases(2) AT2G25610 71.6 8.0e-41 164.9
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g01015 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 8.1e-72 267.7
Bhi09g02278 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 8.1e-72 267.7
Bhi09g02277 . 11 198 Primary Pumps ATPases(2) AT4G32530 70.2 1.9e-68 256.5
Bhi09g02279 . 11 142 Primary Pumps ATPases(2) AT4G32530 75.0 1.8e-42 170.2
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1664.4
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1668.7
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi08g00646 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1315.1
Bhi02g02086 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 2.0e-57 219.2
Bhi05g01683 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01684 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi11g02100 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02099 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02098 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi12g01185 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.8 4.5e-182 634.8
Bhi05g02069 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi05g02068 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi11g02811 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02812 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02813 . 1 369 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-168 589.7
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi05g01683 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01684 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01683 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi05g01684 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.8e-192 666.8
Bhi09g00220 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.0
Bhi05g01683 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01684 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 1.2e-267 919.5
Bhi05g01683 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01684 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.3 1.9e-268 922.2
Bhi05g01683 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi05g01684 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 2.5e-265 911.8
Bhi12g01185 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.8 4.5e-182 634.8
Bhi05g02069 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi05g02068 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 5.1e-116 414.8
Bhi02g02086 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 2.0e-57 219.2
Bhi11g02100 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02099 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02098 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.4e-37 151.8
Bhi11g02811 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02812 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.9
Bhi11g02813 . 1 369 Primary Pumps ATPases(2) AT3G42050 79.4 2.0e-168 589.7
Bhi10g00598 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.0 0.0e+00 1338.9
Bhi04g00220 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.4 1.8e-297 1019.2
Bhi05g01790 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.0e-292 1003.4
Bhi04g00218 . 1 775 Primary Pumps ATPases(2) AT2G28520 61.2 3.4e-283 971.8
Bhi04g00219 . 1 783 Primary Pumps ATPases(2) AT2G28520 61.1 9.8e-283 970.3
Bhi05g01790 . 6 818 Primary Pumps ATPases(2) AT2G21410 76.0 0.0e+00 1234.9
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT2G21410 74.0 0.0e+00 1204.9
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT2G21410 71.7 0.0e+00 1156.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT2G21410 71.8 0.0e+00 1154.4
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT2G21410 62.3 1.3e-298 1023.1
Bhi05g01790 . 8 818 Primary Pumps ATPases(2) AT4G39080 77.2 0.0e+00 1238.0
Bhi04g00220 . 1 808 Primary Pumps ATPases(2) AT4G39080 74.3 0.0e+00 1198.0
Bhi04g00218 . 1 780 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1150.6
Bhi04g00219 . 1 788 Primary Pumps ATPases(2) AT4G39080 71.8 0.0e+00 1147.5
Bhi10g00598 . 9 819 Primary Pumps ATPases(2) AT4G39080 63.4 2.4e-297 1018.8
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.2e-60 229.2
Bhi09g02673 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 8.4e-53 203.8
Bhi04g00232 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00233 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.9e-52 202.6
Bhi04g00232 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00233 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi09g02673 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 6.1e-60 227.6
Bhi04g00232 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi04g00233 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.2e-66 249.6
Bhi09g02673 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 4.9e-66 248.4
Bhi04g00232 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g00233 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi09g02673 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.8e-74 274.2
Bhi04g01015 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 8.1e-72 267.7
Bhi09g02278 . 11 180 Primary Pumps ATPases(2) AT4G32530 76.5 8.1e-72 267.7
Bhi09g02277 . 11 198 Primary Pumps ATPases(2) AT4G32530 70.2 1.9e-68 256.5
Bhi09g02279 . 11 142 Primary Pumps ATPases(2) AT4G32530 75.0 1.8e-42 170.2
Bhi04g01015 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 6.3e-70 261.5
Bhi09g02278 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.4 3.1e-69 259.2
Bhi09g02277 . 4 198 Primary Pumps ATPases(2) AT2G25610 73.8 7.2e-66 248.1
Bhi09g02279 . 4 137 Primary Pumps ATPases(2) AT2G25610 71.6 8.0e-41 164.9
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 8.5e-199 690.3
Bhi11g03018 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.8e-192 666.8
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1664.4
Bhi08g00646 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.5 0.0e+00 1315.1
Bhi04g00444 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.4 0.0e+00 1616.3
Bhi04g00445 . 1 870 Primary Pumps ATPases(2) AT1G10130 82.3 0.0e+00 1410.2
Bhi08g00646 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1668.7
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g01185 Bhi_Chr12 FPKM 0.0 0.0 1.691727 3.26989 0.0 0.0 0.0 0.0 0.0 0.0