Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01225 TCAAAAACAAAATAAAAAAAATAAAATAGTTGTTATACAATTCAAAGTATATAAACTAATCGATATAACACAAAGTTCAAAGACTAAATTGTCTATATATATATATATATATATATATGTATGTATGTATAGAGTTCTATAAGTAGATAACGAACTAAGGGGAAAAAAAAAAGGAAAATGGGAAGAAAGAAAAAGAGGGGTTTTTTTTAGGGGTAGTAGAAAGTCGGACCACAGAATTGAGGGGGTGGCCTGCAGGGTCCAAATAACTAAATTCCTCTAAACTCCCGCTCTCTCTCGCCTCTCCTCTCCTTCACAACGACCATTTCAAATCCCACCACAAAAAGTCAAATAACACAAAAAAAACTCAAATAAAAAACAATAACACACTTAACAAAATCAAATTTTCCCCTTATCATGGATCTTTTTCTTCACAATTCCCATCTCTTTTCTTGAAACTCTCCTCCTTTTTCGTTCTTCCAATTCCCACTTTCAATTACAATGGAGAACAACCAACCTGAGAATCAACACCCTCTTCACAAAACCACTAGCTTCACCACCACCACCACCAACAACAACGATGATGCCAATCCCATTGTTCCTCTTCCTCATCCCCACCCTGCTGTTCTACAAACCGACGCTGGTGTAAAATCTGCTGAAAAATTGGAAGATCAGGATCAGGACCAGAATCAGGATCAGGAGGAGAAGGAGAAGAAGGCCAAGCAAGAGGAGAAGGAAGAGAAGAAGGATGAGGAGGGAGAAGAAAAGAAGGAGGGGGACGAAAAGACGGAGGAGGAAGAAACCCAGGACGAACCGGATCTTCATTACAATCTGCATTCCATTCTTGAAGATGTTGATCAATTTCTGTCAACTCCTCACGCTTCTCCTGATCGAGAGGAAGATTCTGCTGTTGAAATTCCGAAGTTCATCGACAAATTCTTGGATCTCGTGGATGCAAAGATTGAGCAATACAATAACGAAGAATCAAATGCGAAGGAGAAAGAGTATAGAGTGCCGGAGGACGAGTCCACGTTTCTCGAAGCGGTTGATCGGATATCCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGAGAAGACTGCATTGATCAATCGCATCGGGAGCACTCAACAGCAAGCGATTACTTACTTGGAAGAAGAGTTCAGATTCTTTCTTGAGGAATCTAGAAATGGCGATGCCGATCCTGCTGCCGATACGAAAGGGAAACAAGAACAGGATCGTTGTGCATTATCGGACGCTGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGAGGAGATCGTTAGCTATTTGAACAAAATCGCTAAACAAATGATTTCAGGTGGATACGAATCGGAATGTTGCCAAGTCTACATGGTTGCGAGAAGAAACATATTCGAAGAAGCCTTACTGAAGCTTGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAACTGGGAATCAATGGAGAGGGAGATCGCTACATGGATTAAAACCTTCAAGCAATGCGCCACCATTTTATTCTCCGGCGAACGGAATCTCGCCGAATCTGTATTTTCAGCGTATCCTCCGATTTCCGCCAGTCTGTTTAGCAATCTCACTCGCGGCATTGTGATTCAACTCCTAAATTTCTCAGAAGGTGTCGCAATGACAAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAACTCTTCGCGATATGGTCCCAAAAATGGAGACCTTATTTCCAGAAGAGTCCGCCAACGAGATCAAAACAGAAACCACAACCGCTCGAACTCGTCTAGGCGAAGCAGCGATTTGCATATTTTGCGATCTCGAAAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACACGATACACCATAAACTACTTGAAATACGCTTGTGAGTACAGGAACACACTGGAACAGATTTTCAAAGAACACTCAAAGATCGAACGAGCCGATTCAACAAGTCGACCACACTTCGAAGGCGAACAAGCACCAAATTACAACCCTAGCGCTGACAATCAATCACTATTCTCGGTGGAACTGACGCGAGTAATGGAACTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGACATAGCACTGAGTTCAATTTTCATGATGAACAACGGACGATACATCTTACAAAAGATCAAAGGATCTGCAGATATCCATGAACTAGTAGGCGATACGTGGTACAGGAAGAGATCTTCAGATCTACGTCAGTACCACAAGAATTACCAGAGAGAAACGTGGGGGAGATTGTTAGGTTGTTTGAACCACGAAGGATTGACGGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAAGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCACAAAACACAAAGCTCGTGGATCATAAGCGACGAGCAACTTCAATCGGAGCTCCGAGTATCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTTTTAGCTAGGTTTTCGCAGTACTTGGATCCAGGGAGACAAACAGAGAAATACATAAAGTTTCAGCCTGAAGATATAGAAACTTACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAAAAGCTGGAAGCTCTTGCAACCAATTTGAAAAAAGGCAAGACTCCACTCCATCTCTCTTCTTCTTCATCATCATCATCATCATCTTCTTCTTCTTCTTGTTCTATATGTTGTTTTTTGGGAAGCCCACTGTGTGCTGAGGCTAATTTTGTCATTTCAGCTTATTGCAATTCATCAATTGCAATTGCAGTTGCAAATTCTCTTGTTCCTTGGCTTCAACTTGCTGAATTGCTGCTGGGCTGCTCCATTCCTTTTTTCTTTTTATATTATGTTACATTTTTTTTTTCCTCTCTCTCTCTCTCATTTTTTCAAATGATTGTTTGTAATTGTCACAAATTAACAA 2989 41.59 MENNQPENQHPLHKTTSFTTTTTNNNDDANPIVPLPHPHPAVLQTDAGVKSAEKLEDQDQDQNQDQEEKEKKAKQEEKEEKKDEEGEEKKEGDEKTEEEETQDEPDLHYNLHSILEDVDQFLSTPHASPDREEDSAVEIPKFIDKFLDLVDAKIEQYNNEESNAKEKEYRVPEDESTFLEAVDRISKLKTAIHEMKLEEEKTALINRIGSTQQQAITYLEEEFRFFLEESRNGDADPAADTKGKQEQDRCALSDAESDQFQFPGYSEEIVSYLNKIAKQMISGGYESECCQVYMVARRNIFEEALLKLGFEKHSIDDIQKMNWESMEREIATWIKTFKQCATILFSGERNLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYETLRDMVPKMETLFPEESANEIKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPNYNPSADNQSLFSVELTRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDTWYRKRSSDLRQYHKNYQRETWGRLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36323426 36326414 - XM_039018552.1 Bhi12g01225 53037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01225 716 MobiDBLite consensus disorder prediction 1 30 - -
Bhi12g01225 716 Pfam Exo70 exocyst complex subunit 332 702 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bhi12g01225 716 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 94 715 - -
Bhi12g01225 716 Coils Coil 49 94 - -
Bhi12g01225 716 PANTHER EXOCYST COMPLEX PROTEIN EXO70 94 715 IPR004140 GO:0000145|GO:0006887
Bhi12g01225 716 Gene3D Exocyst complex component Exo70 153 714 - -
Bhi12g01225 716 MobiDBLite consensus disorder prediction 90 104 - -
Bhi12g01225 716 MobiDBLite consensus disorder prediction 50 89 - -
Bhi12g01225 716 Coils Coil 147 167 - -
Bhi12g01225 716 MobiDBLite consensus disorder prediction 1 109 - -
Bhi12g01225 716 SUPERFAMILY Cullin repeat-like 173 705 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01225 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206040 1166.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03318 Bhi-Chr1:83466045 Bhi12g01225 Bhi-Chr12:36323426 0 dispersed
Bhi08g01486 Bhi-Chr8:43188853 Bhi12g01225 Bhi-Chr12:36323426 5.97E-104 dispersed
Bhi12g01225 Bhi-Chr12:36323426 Bhi08g00343 Bhi-Chr8:13717469 4.12E-81 dispersed
Bhi12g01225 Bhi-Chr12:36323426 Bhi07g00980 Bhi-Chr7:32480822 6.25E-79 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00686 . 12 653 EXO70 exocyst subunit family AT5G03540 75.3 6.3e-280 960.7
Bhi03g01779 . 1 638 EXO70 exocyst subunit family AT5G03540 70.7 4.9e-264 907.9
Bhi03g01779 . 1 638 EXO70 exocyst subunit family AT5G52340 79.3 2.3e-295 1011.9
Bhi07g00686 . 14 653 EXO70 exocyst subunit family AT5G52340 74.1 7.4e-270 927.2
Bhi03g01779 . 145 631 EXO70 exocyst subunit family AT5G52350 63.5 2.2e-175 613.2
Bhi07g00686 . 149 653 EXO70 exocyst subunit family AT5G52350 58.7 1.5e-163 573.9
Bhi08g00441 . 1 623 EXO70 exocyst subunit family AT5G58430 67.2 1.3e-247 853.2
Bhi08g00441 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 2.1e-173 606.7
Bhi01g03318 . 60 673 EXO70 exocyst subunit family AT5G13150 52.8 8.4e-176 614.8
Bhi12g01225 . 105 716 EXO70 exocyst subunit family AT5G13990 54.5 3.4e-191 666.0
Bhi01g02900 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.6e-216 750.0
Bhi01g02900 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.5e-209 726.1
Bhi01g02900 . 9 608 EXO70 exocyst subunit family AT3G14090 63.9 5.0e-218 755.0
Bhi08g01486 . 18 657 EXO70 exocyst subunit family AT5G50380 62.2 9.3e-226 780.8
Bhi04g01091 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 2.5e-295 1011.9
Bhi07g00980 . 58 614 EXO70 exocyst subunit family AT3G55150 50.5 3.2e-148 523.1
Bhi07g00980 . 31 613 EXO70 exocyst subunit family AT2G39380 50.6 4.8e-152 535.8
Bhi11g02203 . 27 631 EXO70 exocyst subunit family AT3G09520 54.8 1.7e-178 623.6
Bhi10g00657 CCT 35 608 EXO70 exocyst subunit family AT5G59730 50.4 7.4e-153 538.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi12g01225 Bhi_Chr12 FPKM 3.587191 3.690659 1.742927 2.836622 1.629066 2.177156 1.594747 4.723132 4.470213 4.674261