Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01376 TTACAGATACGCAACTCTGCGTCTCATTCTCATTTGTATTTTGTGGTGTTTATCACTTCTTCAATCCAACCCAGCGATTCACCTCCACATAATCACAAACTACCTGAAAATTATTCAACAAAATAAAAAAAAAAATCCAAAAATGAAATTTCGATACACTTGTGGTCGAAATTCAAATCAAAGCTTAATTCAATCAGCGCCAGTATCTGTTCCCTGGCGTATCCTTTCCCCGTTGCGGATTACCCCTTTCACTCTTTTCATCCATGGCCGCCGTTGCTGCAGCAGGTGGGGTTAGTATTGGAGTGACCAACCTCCAACTGAGCCATTTGAAACAACCCATTTCGCCATTTATCGGGAAGAAGCTCAGCTTCAAACACAAATCGGCCTATCTTTGGAGAGTATCCGTTCAGAATCCCAGAAGGGTACTGGTTTCGGCTCTGGGCGCCGAGCTGATCGATGTGGTTCATAATCTCTTTGTGGGTGTGGGAGTGGGGCTTCCTTGTACGGTGATGGAGTGCGGTGATATCATATACAGAAGCACTTTGCCTAAGTCTAATGGCTTAACCCTCACAATTCCTGGTGCTATTTTGGCTTTGGGCACTCTTTCTTATCTCTGGGCCACTCCTGGAGTGGCTCCTGGCTTCTTTGACATGTTTATTCTTGCATTTGTTGAGAGGATTTTGAGACCCACTTTCAGAAAGGATGATTTTGTTTTGGGAAAGAAGTTGGGAGAAGGAGCGTTTGGTGTGGTCTATAGAGTGTCACTGGCTAAAAACCCTACAGACAAGAAGGAAGGTGACCTTGTCTTGAAAAAGGCTACCGAGTATGGTGCAGTTGAAATTTGGATGAACGAGCGAGTTCGACGTGCTTGTGCTAATAGCTGTGCAGACTTTGTGTATGGCTTCCTTGAGAACTCTTCAAAGAAAGGAGATGGTGAATATTGGCTCATATGGAAGTTTGAAGGGGAAGCTACATTGGCAGATTTAATGCAAAGCAAAGAGTTTCCCTATAATGTAGAGAGGATGATTCTCGGCGAGGGGCAGCGGTTGCCCAAAGGGTTGGAAAGGGAGAATAGAATTATTCAGACAATTATGCGACAGCTCTTGTTTGCATTGGATAGTCTTCACTCGACAGGGATTGTGCATAGGGATATCAAGCCACAGAATATCATTTTCTCTGAAGGATCTCGCACTTTCAAAATTATTGATCTTGGAGCTGCTGCTGATTTGCGAGTTGGCATTAACTATATTCCAAAGGAGTTTCTATTGGACCCCAGATATGCTGCCCCAGAGCAATACATCATGAGCACACAAACACCGTCTGCTCCCTCAGCTCCTGTGGCAACTGCACTTTCCCCAGTCCTATGGCAGATGAACCTCCCAGATAGATTTGATATCTACAGTGCCGGTCTCATCTTCTTACAGATGGCATTTCCAGCATTACGGACAGACAGCGGCCTGATACAATTCAACCGTCAGTTGAAAAGATGTGACTACGACTTAGTTGCCTGGAGGAAAAGCGTAGAGCCTCGTGCTAGTTCCGACCTAAGGAAGGGCTTTGAATTGTTGAATTTAGATGAAGGAATAGGATGGGAACTCCTGACATCAATGGTTCGATACAAAGCACGACAAAGAACAAGTGCTAAAGCAGCTTTAGCTCACCCATATTTTAACAGGGAAGGTTTATTAGCTCTGTCCTTGGTGCAGAAACTGAGGTTGCAGTTCTTTAGAGCTACACAACAGGACTACACTGAAGCTGCTAATTGGGTCATTCAGCTAATGGCAAAATCAGGAACCGAGCAGGATGGTGGCTTCACTGAAGCTCAGCTTCTTGAGCTCAAAGAAATGGAGCCGAAGAAGAAAGCAAGCGCTGAAAGAAATGCTTTGGCTTCGATTCTCAAACTGCAACGGAAGATCTTAAAAACGTTAAATGAAAGCATGGATGAGCTAAGTCGACGAGGCAAGAGCCTGTGGTGGAGTAGGTGGATTCCCAGAGAGGAATGAAGATAGTTTGTATGTATATATTTTGCAAGTTTTCTTCTTTTTCCTTCTTTTGGTTGTAAATTTTGTGTAGTCATTCTAACTAAACACAAGTGAAGATATAGAAGCTGAAATCTAAAAGATACGTACTAGAAGTCTCTCAAACAAGCATGAACTCTTATGACAGTAAAAACATTGATTTTAACTGTATTGTTCGCCAGAATCCTATATATTATAGATAAGTTTTCACTAA 2232 43.1 MAAVAAAGGVSIGVTNLQLSHLKQPISPFIGKKLSFKHKSAYLWRVSVQNPRRVLVSALGAELIDVVHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTIPGAILALGTLSYLWATPGVAPGFFDMFILAFVERILRPTFRKDDFVLGKKLGEGAFGVVYRVSLAKNPTDKKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLENSSKKGDGEYWLIWKFEGEATLADLMQSKEFPYNVERMILGEGQRLPKGLERENRIIQTIMRQLLFALDSLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPALRTDSGLIQFNRQLKRCDYDLVAWRKSVEPRASSDLRKGFELLNLDEGIGWELLTSMVRYKARQRTSAKAALAHPYFNREGLLALSLVQKLRLQFFRATQQDYTEAANWVIQLMAKSGTEQDGGFTEAQLLELKEMEPKKKASAERNALASILKLQRKILKTLNESMDELSRRGKSLWWSRWIPREE 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 43599787 43605389 - XM_039019455.1 Bhi12g01376 53188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01376 579 ProSitePatterns Protein kinases ATP-binding region signature. 155 183 IPR017441 GO:0005524
Bhi12g01376 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 579 IPR044803 GO:0004674|GO:0009579
Bhi12g01376 579 Gene3D Transferase(Phosphotransferase) domain 1 258 473 - -
Bhi12g01376 579 CDD STKc_SNT7_plant 153 469 - -
Bhi12g01376 579 SUPERFAMILY Protein kinase-like (PK-like) 133 471 IPR011009 -
Bhi12g01376 579 SMART serkin_6 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g01376 579 Coils Coil 545 565 - -
Bhi12g01376 579 Gene3D Phosphorylase Kinase; domain 1 136 231 - -
Bhi12g01376 579 ProSiteProfiles Protein kinase domain profile. 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g01376 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 1 579 - -
Bhi12g01376 579 Pfam Protein kinase domain 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi12g01376 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01376 - - - csv:101207504 1080.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01480 Bhi-Chr1:30421453 Bhi12g01376 Bhi-Chr12:43599787 2.72E-08 dispersed
Bhi03g02226 Bhi-Chr3:48896639 Bhi12g01376 Bhi-Chr12:43599787 4.42E-99 dispersed
Bhi05g00625 Bhi-Chr5:17535489 Bhi12g01376 Bhi-Chr12:43599787 4.71E-10 dispersed
Bhi12g01376 Bhi-Chr12:43599787 Bhi03g02268 Bhi-Chr3:49745000 1.15E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88517 PF00069 Pkinase 3.70E-22 CL0016 Bhi PK