Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01415 GCTTCCATCTCTTTTCTCTCTTCATCACTCTTCAATTTCAATTCTACCCATTTTTGCTTCCCCCCATATATTTCACATTGTCCTTTTTTTCCCCCCATTGATTTGCAGGTTGCTGCTTCCGATCTTAGCTGCTACACCACATAAGGGAAGAGAAGATGAAGGTGATTGACAAGATCCGGGAAGCCACCACCGGCGATGGCGGCAGAGTGGTTTTTTCCTTTGAGTACTTCCCACCCAAGACGGAGGACGGCGTTGATAATCTGTTTGAGAGGATGGACCGCATGGTGGCTCATAATCCTTCCTTCTGCGACATTACTTGGGGCGCCGGTGGCTCCACCGCCGATCTCACCCTCGACATTGCCAACAAGATGCAGAACATGATCTGTGTTGAGACTATGATGCATCTCACCTGCACCAATATGCCTGTTGAGAAGATCGACCATGCTCTTCAGACTATCAAATCCAATGGCCTTCAGAATGTCCTCGCGCTTCGCGGTGACCCTCCCCATGGACAGGACAAATTTGTCCAGATCGAAGGCGGCTTCGCTTGTGCTCTCGATCTTGTTAAACATATCAGGGAGAAATATGGTGACTACTTCGGCATTACTGTAGCTGGATATCCAGAGGCACATCCGGACGTGATTGGAAGCAATGGTGTGGCGACGCCTGAAGGCTACCAGAGCGATCTGGCTTATCTTAAGAAAAAGTTTGATGCTGGGGCTGATCTGATTGTTACCCAACTCTTCTATGACACTGACATTTTCCTCAAGTTCGTCAATGATTGTCGTCAAATTGGAATTACTTGTCCAATTGTACCTGGTATTATGCCCATCAATAATTACAAAGGTTTCTTACGTATGACTGGCTTTTGCAAAACGAAGATTCCAGATGAGATTATGGCTGCCTTAGAGCCTATCAAGGATAATGAAGAAGCTGTCAAAGCTTATGGAATTCACCTCGGAACTGAGATGTGCAAGAAGATTTTGGCCCATGGAATCAAGACTCTACATATTTATACACTGAATATGGAGAAATCGGCATTGGCTATACTAATGAATCTTGGTCTGATTGAAGAGAGCAAAATCTCAAGATCCTTACCTTGGAGGCGACCCACAAATGTTTTCCGTGTCAGGGAAGACGTTCGCCCAATCTTCTGGGCTAATCGTCCTCGAAGCTACATATCGAGGACCATAGGTTGGGACCAGTATCCCCATGGTAGATGGAGTGATTCTAGTAATCCTTCATATGGGGCACTAACTGACTATCAGTTTATGCGGCCACGGGCACGTGACAAGAAGCTTCTTGAGGAATGGGCTCTCCCATTGAAAAGTGTAGAGGATGTTTATGAGAAATTTATGAAGTACTGCCTTGGAAAGTTGAGAAGCAGTCCTTGGTCTGAATTAGAAGGTCTTCAGGCTGAGACAAGGATAATAAGCGAACAGCTTGGAAAACTAAACATGAAAGGTTTCCTTTCTATCAACAGCCAACCAGCAGTCAATGGAGAAAGATCTGATTCTCCTTCCGTAGGATGGGGTGGACCAGGAGGTTACGTTTATCAAAAGGCATACATCGAGTTTTTCTGTTCCAGGGAAAAGTTGGATGTTGTTGTTGACAAATGCAGGTCTCTTCCATCTCTAACCTACATGGCGGTGAATAAGGAAGGCATCTGGGTATCCAACATCACTCAAAAGGATGTGAATGCTGTAACATGGGGAGTTTTCCCAGCCAAAGAGATCATCCAGCCAACCGTTGTCGATCCTGCCAGTTTTCTTGTGTGGAAAGATGAGGCATTTGAGATTTGGTCAAGGGGATGGGCTGCCTTATATCCCGAGGGCGACCCCTCTCGAAAATTGCTTGAAGAGATACAGAGCAGCTATTACTTGGTGAGCTTGGTGGATAACGATTATGTCAATTCTAACCTCTTTGCTGCTTTGGAGGACTTCTGAGATGAGCTCTGCTATTTCTTTCCATGATTCCAGTTTTACTTTTATCTTTCGATTTCTCATTGAAGCCTGGATAAGGTTAATTCAAGAAGAATTTTATTTTATTTTTTTTCTGTTTGTTTGAGTTTATAATATAATTCCCAAAAGGGTTGTCCATTTTATTACATTAAAAGCAATTTTGGGATTTTAAACTTCCTGAAGTTGGATGTAATGTATCATTCATTTGTGACTCAAGTATTTAGATTAAAAATATCTCTAAGGGGGTATTTTGTTTGAGATTTTATAAA 2230 43.36 MKVIDKIREATTGDGGRVVFSFEYFPPKTEDGVDNLFERMDRMVAHNPSFCDITWGAGGSTADLTLDIANKMQNMICVETMMHLTCTNMPVEKIDHALQTIKSNGLQNVLALRGDPPHGQDKFVQIEGGFACALDLVKHIREKYGDYFGITVAGYPEAHPDVIGSNGVATPEGYQSDLAYLKKKFDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPDEIMAALEPIKDNEEAVKAYGIHLGTEMCKKILAHGIKTLHIYTLNMEKSALAILMNLGLIEESKISRSLPWRRPTNVFRVREDVRPIFWANRPRSYISRTIGWDQYPHGRWSDSSNPSYGALTDYQFMRPRARDKKLLEEWALPLKSVEDVYEKFMKYCLGKLRSSPWSELEGLQAETRIISEQLGKLNMKGFLSINSQPAVNGERSDSPSVGWGGPGGYVYQKAYIEFFCSREKLDVVVDKCRSLPSLTYMAVNKEGIWVSNITQKDVNAVTWGVFPAKEIIQPTVVDPASFLVWKDEAFEIWSRGWAALYPEGDPSRKLLEEIQSSYYLVSLVDNDYVNSNLFAALEDF 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 45275181 45281025 - XM_039018909.1 Bhi12g01415 53227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01415 596 Pfam Methylenetetrahydrofolate reductase 15 303 IPR003171 GO:0004489|GO:0006555
Bhi12g01415 596 PANTHER METHYLENETETRAHYDROFOLATE REDUCTASE 1 1 592 - -
Bhi12g01415 596 TIGRFAM fadh2_euk: methylenetetrahydrofolate reductase 19 307 IPR004621 GO:0004489|GO:0006555
Bhi12g01415 596 Gene3D - 1 306 - -
Bhi12g01415 596 CDD MTHFR 20 302 IPR003171 GO:0004489|GO:0006555
Bhi12g01415 596 PANTHER METHYLENETETRAHYDROFOLATE REDUCTASE 1 592 - -
Bhi12g01415 596 SUPERFAMILY FAD-linked oxidoreductase 14 304 IPR029041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01415 K00297 metF, MTHFR; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] - csv:101216871 1196.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01415 Bhi-Chr12:45275181 Bhi12g01416 Bhi-Chr12:45275181 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01415 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003998 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 0 43