Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01461 ATGGAGAAATTACAGAGCATTCCGATGAAGAAAACTCTTGGCCGTCAAAAGATCGAAATAAAAAAGTTAGAGAAAAAAAGTACTAAACAAGTAACGTTTTCAAAGCGTCGTGCTGGACTTTTCAAGAAAGCTGGTGAGCTCTCTATTCTTTGCGGAGTAGAGGTAGCCATTATTGTCTTCTCTCCCAACGATAAGGTTTTTTGTTTCGGTCATCCCGATGTGGAAGGGCTTTTGGATCGATATCTGAACAAAAATTTATCGCCGCCGAAGCCAGCAGAGAGTTACATTCCTGTAGAAGAGTTTAATCGTGATTTCGCCGATGTCGCTTTGGAGTTTGAGACAGAGAAGAAGCGAGCAACGGATTTGATTCGGGCGGCAGAGGATTCAAGGAAGAACGGCAGATTTTGGTGGCAGGAACCAGTGGAAGGGATGAGATTGGATGAGTTGAAGGTGTTCCGATCGGCATTGATGGATTTGAGAGCCAGAGTGGCAGAGAGAGTTGAGAAATTGACAGCGGCAAGAATTGGAGGGCTTCTTTTGCCTGCTCTTCCACCGCCGCCACAGTCGATGACATCGTCGTCGTTTCACCTTGCTGGAAATCAACAACCATTGCCACCTCCGACGGTGTTTGAACTCGCCGGAAACCACTCTACGCAACGGGGTTAG 666 46.7 MEKLQSIPMKKTLGRQKIEIKKLEKKSTKQVTFSKRRAGLFKKAGELSILCGVEVAIIVFSPNDKVFCFGHPDVEGLLDRYLNKNLSPPKPAESYIPVEEFNRDFADVALEFETEKKRATDLIRAAEDSRKNGRFWWQEPVEGMRLDELKVFRSALMDLRARVAERVEKLTAARIGGLLLPALPPPPQSMTSSSFHLAGNQQPLPPPTVFELAGNHSTQRG 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 47324506 47325171 - XM_039019076.1 Bhi12g01461 53273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01461 221 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 Gene3D - 25 91 IPR036879 GO:0003677|GO:0046983
Bhi12g01461 221 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Bhi12g01461 221 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 14 171 - -
Bhi12g01461 221 MobiDBLite consensus disorder prediction 187 221 - -
Bhi12g01461 221 PANTHER MADS BOX PROTEIN 14 171 - -
Bhi12g01461 221 SUPERFAMILY SRF-like 14 85 IPR036879 GO:0003677|GO:0046983
Bhi12g01461 221 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01461 - - - csv:101206073 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00058 Bhi-Chr3:1432325 Bhi12g01461 Bhi-Chr12:47324506 8.26E-24 dispersed
Bhi09g02789 Bhi-Chr9:74542700 Bhi12g01461 Bhi-Chr12:47324506 4.07E-94 dispersed
Bhi10g02112 Bhi-Chr10:53219805 Bhi12g01461 Bhi-Chr12:47324506 8.55E-77 dispersed
Bhi11g01095 Bhi-Chr11:32317641 Bhi12g01461 Bhi-Chr12:47324506 9.40E-34 dispersed
Bhi12g01461 Bhi-Chr12:47324506 Bhi01g01389 Bhi-Chr1:28046262 2.48E-21 dispersed
Bhi12g01461 Bhi-Chr12:47324506 Bhi08g02086 Bhi-Chr8:60328866 5.50E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01461 . . . Hepe03g0389 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000961 2 4 1 4 2 2 4 2 2 2 2 2 4 2 5 4 2 0 4 2 2 4 6 3 2 3 2 2 3 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2677 PF00319 SRF-TF 2.30E-23 No_clan Bhi TF