Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01464 GCAAACTCAAGGAAAAGATGTTTAACGAATAATTAAATCGGAAAAGGGAAAAATTAGGAGGAAAGAAAAAAGGAAAAAAATTGAGCTCGGAACCCTAGCAATCGAAGCGAGAGGTTGAAGACAATCTCAATCGCTCAAATTCAAATTCATCTAAAATAATTGCAGTAATTTTGTTCTGAATTCGTTCACAATCGCTACAGAGAAAAAAATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTTTGGTCCTCTACTCCTTCTGTCGACGACGATCGCCTCCACCGCTACACTTCCGAGCCGGCAGCCACCACTTCTTCGCCGGAACCCGTCGTTGAACCCCCTGTCCCGGTTCCTCCTCCGTCTGCGAGCACCGCCATTAGAACCGAGTCTCCTAAGTCTGATAGAGACTCCAGGGCTAATAACAATGTCACCAACGACGATAATGGCACTTCCTCAGGCCCTTCTGCTGAGGATGTATCTCGCCAGGCACAGCTTATTGTAGAGTTGTCGAAGAAGATCATAAATCTGCGTGAATTGCGTAAAATTGCATCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTGTTGGGTTATCTGCCACCAGATCGTGGGCTCTGGACATCTGAGTTAGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAAGAGCTTTTGATGAATCCTTCCGAAATTTCAAGGAGGTTGGAGAAGGCCAAAAGTTACGAGCATGATGAAACGAACAAGGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAACATCCTTTGAGTCTTGGGAAAACCAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGACCGAGATGTAAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAACCAGGAGGCTCTGAGAAATATCTTAATTGTATTTGCAAAGTTGAATCCAGGAATTAGATATGTTCAAGGGATGAATGAAATTTTAGCTCCTCTATACTATGTATTTAGAAGCGATCCTGATGAGGATAATGTGGCATCTGCTGAAGCAGACACGTTCTTTTGTTTTGTTGAGTTATTGAGCGGATTTAGGGATCATTTCTGTCAGCAACTGGATAATAGCGTTGTGGGAATTCGTGCCACGATCACAAAGTTGTCTCAACTTCTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCGTTTAGGTGGATCACTCTCCTCTTGACCCAAGAGTTCAATTTTGCAGACAGCCTTCACATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGGAAACACTCCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCTTACTTGCAGGCGATTTTACGGCTAATCTCAAACTGCTCCAACACTATCCCCCAGCAAACATCAGTCATTTGCTCTACGTCGCAAACAAGTTGCGCAAACAACCTTCAATCTGATCTCTCTTTTCAACGCCATAGTTCTTCTTGCGCTTCCTTTTCCTGTTTGATTTTTTTTCTCTCTCTAAAATATTCTAGTGTTGGTCAATTACTGGATGTAAATGTTGGTTGAAAGAATGAATTATAGGGGCAGGATATAAAAGGATTGTTCATTAGTTGTTGACTTGTAGTAGTTCTTCTTCTTGTGTTTACAGGACTTTTGTGTATCTTTTCTGAGAGATTAGTAGTGAGTGATATTTTTCAAGGTCTGATCCTTTTGTAGTTTGCACAATTTTGGCTCATTGTTTATTCAAATTTCCTCGTTTGAGTTTCTCTTCAA 1862 42.37 MVKKRVPDWLNSSLWSSTPSVDDDRLHRYTSEPAATTSSPEPVVEPPVPVPPPSASTAIRTESPKSDRDSRANNNVTNDDNGTSSGPSAEDVSRQAQLIVELSKKIINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRGLWTSELAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQEALRNILIVFAKLNPGIRYVQGMNEILAPLYYVFRSDPDEDNVASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLRKQPSI 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 47456088 47462120 + XM_039019733.1 Bhi12g01464 53276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01464 444 MobiDBLite consensus disorder prediction 175 200 - -
Bhi12g01464 444 Gene3D - 322 443 - -
Bhi12g01464 444 ProSiteProfiles TBC/rab GAP domain profile. 121 386 IPR000195 -
Bhi12g01464 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 323 440 IPR035969 -
Bhi12g01464 444 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 441 - -
Bhi12g01464 444 MobiDBLite consensus disorder prediction 1 92 - -
Bhi12g01464 444 MobiDBLite consensus disorder prediction 40 54 - -
Bhi12g01464 444 Pfam Rab-GTPase-TBC domain 126 408 IPR000195 -
Bhi12g01464 444 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 100 345 IPR035969 -
Bhi12g01464 444 MobiDBLite consensus disorder prediction 175 189 - -
Bhi12g01464 444 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 441 - -
Bhi12g01464 444 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 314 - -
Bhi12g01464 444 SMART tbc_4 116 412 IPR000195 -
Bhi12g01464 444 Gene3D - 90 144 - -
Bhi12g01464 444 MobiDBLite consensus disorder prediction 75 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01464 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 850.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03691 Bhi-Chr1:94669542 Bhi12g01464 Bhi-Chr12:47456088 4.06E-33 dispersed
Bhi06g01221 Bhi-Chr6:35861635 Bhi12g01464 Bhi-Chr12:47456088 1.96E-09 dispersed
Bhi12g01464 Bhi-Chr12:47456088 Bhi09g01287 Bhi-Chr9:31489313 6.18E-22 dispersed
Bhi12g01463 Bhi-Chr12:47456088 Bhi12g01464 Bhi-Chr12:47456088 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42