Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01467 ATGGGAGACGTTGCAGGCGCCGCCCCCGCCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAACATTCTCATCACCAGCGCTCTTCCTTACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGTCTTAGAGGTTATAACGCTATTTACATATGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGACAAGTATCACGCCATTCACAAAGAAGTTTATGATTGGTTTGGTATTAGTTTTGATGAATTTGGGCGCACATCATCTCCACAGCAGACTGAAGTTTGTCAAGCAATATTTGGCAAACTATTGGAGAACAATTGGCTTTCTGAAAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCTCATGTCCTACTCCAGGTTGTGAGTATGACTCTGCACGTGGTGATCAGTGTGAGAAGTGCGGGAAACTTCTAAATCCAACTGAATTGAAAGACCCTAGGTGCAAGGTCTGTCAAACAACCCCACGTATTCGTGACACCAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGACGTGTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACATGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTCTGGTTTGATGCACCTATAGGATACGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAAAATGTGGAGCTTTTTCAATTTATGGGAAAGGATAATGTGCCTTTCCACACGGTTATGTTTCCATCTACTCTTCTTGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATATTTAAACTATGAAGCAGGAAAATTTTCTAAAAGTAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACGTGGGCTGATTTACAAGCAAAACTTAATGGCGAGTTACTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCCAAACCTTTAGGGCAGGGTTATGGTTCCATTATTCCTGATGCTCCTGACGTGGTGTCTCATGAACTAACATTGGGTTTGGCTGAAAAAGTGGGTAAATACGTAGACCAATATATGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTGAAAGCTGCAATGGCTATTTCAAGTGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAAGCGGACAAACCTTCCTGCAATATTGTTATGAGAACTTCAGCTGGTCTAGTACATCTTCTAGCATGTTTATTAGAACCTTTCATTCCTTCTTTCTCATTGGAGGTGTTTAGGCAACTGGATTTACCTCCGGGACGACATATTTCACTTTGTGAAGAAAAAGGAGACATTGAGAAAGCAAAACAACCTTGGAAGATTCTACCTTCTGGTCATAAGATTGGCACACCAGAGCCACTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCTGGAAGTCAGGCTCAACGTATTGTGAGAGCAGAAGCTGAAGCAGAAAAGATTGCTGCTCAGCTAAAAAAAACTAACGTCTCAGGCAGTGGAAAAAAGCAACAGGCAAAATCCACAGGCAGCAAACCGAAAGCTGCTGTGGAAACAGAAATTACGATTACGAGACTGGATATCCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTCGAAGAAATCGATGTGGGAGAATCGCAACCTCGAACCGTTGTCAGTGGATTAGTCAAATACATACCAATTGAAGAGATGCAGAATCGGAAGGTGTGTGTTCTTTGCAACTTGAAGCCGGCATCCATGAGAGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGCGATCATACTAAGGTCGAATTAGTCGAGCCACCCAAAGATGCCAATGTCGGAGAAAGAATTAAATTCCCAGGATTTGAAGGTGAGCCGGACGATGTATTGAACCCGAAGAAGAAGGTATGGGAGACGCTGCAGGTAGATTTAGCTACAAACACAGACCTGGTGGCATGTTTTAAAGATATACCATTTACCACATCAGCTGGTGTTTGCAAAGTTTCTTCCATTTCTAGTGGTTCTATCAGGTAGACCAAAAATATCTCAATCAACCACTGAAGGGAGAGGAGAGCAGGATTTCGTTTTCCAGGTCTCGAGTTTACTTTTTTTCCCCCTCCATCTTTTTCTTTATTTGCAATGTCATTATGCTTTATTTATGGGATTATTGGCGAATCAATTGTCCCAAGTTATAGAAAGTTGTATTCGATTTTATATTATGTTTGAAAAAAATAATTACTGAAAATATTAAGGATTGCAAAATTTCCCTCA 2655 41.39 MGDVAGAAPAGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYDWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGSCPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTTPRIRDTNHMFLELPLLREKLEEYINKTCVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDAPDVVSHELTLGLAEKVGKYVDQYMESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCNIVMRTSAGLVHLLACLLEPFIPSFSLEVFRQLDLPPGRHISLCEEKGDIEKAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKIAAQLKKTNVSGSGKKQQAKSTGSKPKAAVETEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRTVVSGLVKYIPIEEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPDDVLNPKKKVWETLQVDLATNTDLVACFKDIPFTTSAGVCKVSSISSGSIR 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 47545125 47553069 - XM_039051267.1 Bhi12g01467 53279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01467 805 Gene3D - 642 805 IPR012340 -
Bhi12g01467 805 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 411 591 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bhi12g01467 805 CDD MetRS_core 24 394 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 27 40 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 60 74 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 108 119 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 276 287 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 311 326 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 PRINTS Methionyl-tRNA synthetase signature 406 417 IPR033911 GO:0004825|GO:0006431
Bhi12g01467 805 ProSiteProfiles tRNA-binding domain profile. 643 746 IPR002547 GO:0000049
Bhi12g01467 805 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 160 196 IPR029038 -
Bhi12g01467 805 SUPERFAMILY Nucleotidylyl transferase 22 404 - -
Bhi12g01467 805 MobiDBLite consensus disorder prediction 615 633 - -
Bhi12g01467 805 Gene3D - 408 578 - -
Bhi12g01467 805 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 32 43 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bhi12g01467 805 MobiDBLite consensus disorder prediction 615 635 - -
Bhi12g01467 805 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 7 805 - -
Bhi12g01467 805 PANTHER METHIONINE--TRNA LIGASE 7 805 IPR023458 GO:0004825
Bhi12g01467 805 Pfam Anticodon binding domain of methionyl tRNA ligase 448 595 IPR041872 -
Bhi12g01467 805 Gene3D - 160 196 IPR029038 -
Bhi12g01467 805 TIGRFAM metG: methionine--tRNA ligase 25 560 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Bhi12g01467 805 Pfam Putative tRNA binding domain 649 743 IPR002547 GO:0000049
Bhi12g01467 805 SUPERFAMILY Nucleic acid-binding proteins 644 803 IPR012340 -
Bhi12g01467 805 CDD Anticodon_Ia_Met 403 536 IPR041872 -
Bhi12g01467 805 Pfam tRNA synthetases class I (M) 25 419 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bhi12g01467 805 Gene3D HUPs 24 407 IPR014729 -
Bhi12g01467 805 Hamap Methionine--tRNA ligase [metG]. 23 590 IPR023458 GO:0004825
Bhi12g01467 805 Coils Coil 599 619 - -
Bhi12g01467 805 CDD tRNA_bind_EMAP-II_like 642 745 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01467 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1541.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02766 Bhi-Chr3:70768846 Bhi12g01467 Bhi-Chr12:47545125 1.18E-37 dispersed
Bhi06g00749 Bhi-Chr6:16981520 Bhi12g01467 Bhi-Chr12:47545125 2.54E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48