Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01502 CTTTCTTCTTGATTTGTGATTTTCAATGTGGGGTTTCTTTATTTTAATGAATGGAGGGTGCATTGGGGCATAACCCCACCTTCGAACCCAAAAGTCCATTTACTCATTCATAATAGCCATCTCTTTTGGATTTCCCATTTCTTGATTTTGGGATTTTGAATATTTTTGTTTAATGGGGTTCTTTGAAAAATTTGCAACTTTTGAAATCTGATTTTGTGTCAGATAATGGGGAAATAGATAGGGAGAAGAAGAAGGAAATGAACTTTTTGGCTTTGTCAATTTAGAGGAGACAATTGTTTAATACCCATTAGATATCTTTGGAATGTCAGGGAAAGGTCCATAGCTTTGTACTAGGCCTGAAAACTTTCCCAGCGAGAGAGATTTATTGCAATGGCCTAAAATGGGAGGCTCATCTCATCACCTCTTTTGCTAGCCTCTGTAGGAAAAAGGGTCTGGCTTCTGGGTAGTTCTTTGGGTTCAGCCCCTTGGTTCTCTTAGAGGAATTCATGGCTGTGACAGCTTTGCTGTACCATTTTCTTTTTTGGGTCTTTGAATCTCTACCTTATTACTGGGAGTTATTTCATCTGTTCAGTTACAATGCTTGTATGCTACATAAAAGGAATTGTGGANAAGATTTTCTTGCTGACTGGAGGAGACGAATCAAGGGAGAGGGCTTTCTGGTTTTCCAAGACAAATCTATGTATAAAGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAAGCTGGGGTATTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACATCCTTGGAAAAGCTCCACTCTGTCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATCGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCGACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCACCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACAAATTTCTGATTCCTCTACTTGCCCAAGTGCAGCGACAATTCCTACGCAAGCAATGACCTCTATGTTGCCGCCATCAGAAAATCAGGCAGCATCCCAGCAACCAAGGAGTACTGCGACTGAACTTCCAGCAGTTGCTCCAAGTTCGACATCACCAGCGGGAGGGTTTCCAGTGATCGGAGTCATTGACGGAAAATTTGATAGTGGATATCTTGTTACTGTTACCGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTGAGCAACAAGTTTTACAGTCTGTCGGTGCTTTTGCCAAAGATGTTGCTACCTCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAGTCTGAGATAAAGCGGAGGGATCCCGCTCATCCAAAGCCAAACAGAAGTGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCCGACTCAAACCGTTATACCCAGGAAAGGACAGGGAGATAAGCAGAATGATCGGTGATCTTTGGAATAAACTAAAAGAATCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAGTCGAGATGGAGGATTACAGAGAGAAGCTGAGAACAGGCCAAATCATCAGTGATGCAGTGCCCTTGCAGCAGCGACTTCCCGAACCAGACCTCAATATGGTCTATGCTGACAAAAACGAAGAAACCGAGGGCGGCGAGTCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCTGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAGGAGGAAGAAGAAGAGGAAGACTCGGAAGACTCAGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACATTTTGGCTGAGGAGGAACAGTGCGAGACGAAAACAGCCGAAGAGGATGCTGTTAGAAAAGAGAGTAGCATGGTCCGTGACGATAAAGAAGTTTATGCTGGGGATTCAGTAATGATGGAGGTGGAGGCAAAGACAGAACCAGAACCAACAACATCCATTAGAGAAGATTAAGATACTATACCGCTCAGTTTTTGCAGTGCCTTTTCTTCAATTTTTTTTCCTTTTTCTCCTTTGTCTCTAGCTTCCATTCCTTCTAACCTTCCATTACTTTAGCTAATACTTGTAAAGTTTTCTGACAGCTGTTGAGATTCTTATCAGGGAAAAGTTTTGGATCTTTCCATCAGTTCTGTTTTGGGAAGAAATTTTGTTGCCTTTTGTTGAACATTTCAACTGAATTCATTCCCTGATTTGTTTACAAGTTAAGGTGGCCATCAGTTTTCACTACTATGCCAGCCTTTTAGTTTAA 2523 42.41 MAVTALLYHFLFWVFESLPYYWELFHLFSYNACMLHKRNCGXDFLADWRRRIKGEGFLVFQDKSMYKVHWLMIEEERTEASWGIRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSVMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPQISDSSTCPSAATIPTQAMTSMLPPSENQAASQQPRSTATELPAVAPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSEQQVLQSVGAFAKDVATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRVEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESQTPDNDTSYVEGDSGEYKTEEKEEEEEEEEEDSEDSEEDASPQGIGNVDVNILAEEEQCETKTAEEDAVRKESSMVRDDKEVYAGDSVMMEVEAKTEPEPTTSIRED 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 48452704 48458488 - XM_039020083.1 Bhi12g01502 53314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01502 573 Pfam ARID/BRIGHT DNA binding domain 129 211 IPR001606 GO:0003677
Bhi12g01502 573 Coils Coil 483 505 - -
Bhi12g01502 573 Pfam HMG (high mobility group) box 359 426 IPR009071 -
Bhi12g01502 573 MobiDBLite consensus disorder prediction 339 353 - -
Bhi12g01502 573 ProSiteProfiles ARID domain profile. 124 215 IPR001606 GO:0003677
Bhi12g01502 573 CDD HMGB-UBF_HMG-box 359 423 - -
Bhi12g01502 573 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 359 426 IPR009071 -
Bhi12g01502 573 MobiDBLite consensus disorder prediction 521 552 - -
Bhi12g01502 573 Gene3D - 118 219 IPR036431 GO:0003677
Bhi12g01502 573 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 78 498 - -
Bhi12g01502 573 SUPERFAMILY ARID-like 121 226 IPR036431 GO:0003677
Bhi12g01502 573 SMART bright_3 125 216 IPR001606 GO:0003677
Bhi12g01502 573 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 78 498 - -
Bhi12g01502 573 SUPERFAMILY HMG-box 352 431 IPR036910 -
Bhi12g01502 573 MobiDBLite consensus disorder prediction 484 505 - -
Bhi12g01502 573 MobiDBLite consensus disorder prediction 332 365 - -
Bhi12g01502 573 Gene3D High mobility group box domain 343 438 IPR036910 -
Bhi12g01502 573 Coils Coil 408 428 - -
Bhi12g01502 573 MobiDBLite consensus disorder prediction 244 270 - -
Bhi12g01502 573 SMART ARID_2 121 211 - -
Bhi12g01502 573 CDD ARID_HMGB9-like 126 211 IPR045303 GO:0003677
Bhi12g01502 573 MobiDBLite consensus disorder prediction 439 573 - -
Bhi12g01502 573 SMART hmgende2 358 427 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01502 - - - bhj:120068345 1117.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02941 Bhi-Chr9:76665815 Bhi12g01502 Bhi-Chr12:48452704 1.37E-94 dispersed
Bhi11g03022 Bhi-Chr11:82234101 Bhi12g01502 Bhi-Chr12:48452704 5.49E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2679 PF01388 ARID 1.50E-17 CL0123 Bhi TR