Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01516 TCACTGACATCACCACTGCTCGTTTTCCTCAGTTCTTCTTCTTCTTCCTTTTCCTTTTTTCTCTCTATATTTCTTCTTCTTCATAGTCTCTCTCTCTCTCTTGTTCGCTCTGGTTTTTCTTGAGAGTTTTGACGAGAGAGAGAGAGATATCAGTAATGGCGGCACTTAGCAAATGGCCTTCTCTGTCTCTCTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTGGTTCGCAAAGAAAAGACCTCTGAAATTAGGGTGAAGAATGATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAACTGGCACCGTAACCGTAAGCGTCTTGCAGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTTGTCACTGATTCGAGTGACCACGATCCGGTGAACCCAAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAACTTATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCCAATGGCGCTTGTATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCAACAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGACGGACTCGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCAGCTCCAACCAACCCCTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACGCCAGAGAGCGAATGGAAGGGTTGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGATCCATCACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAAGACTTGTCCACGTGTCCTCCATTTTAACTTCAAACATCAAATGTTAAAAGCCTTTCCTCTTCCTGTTTGATTTCCATCATATCTCCCTTGTCCCTTCATTTATAATAGCCATTTAACAAAGTACACATTTTTTTTCCTTTCAAACTTGTTTTTAAAACCTTCATTCCTTCCACCATTGTTGTGTTCAATCTGTTGGTTGCTCAACCTCGGCCTGCTTCAGCTGAAAAGAAAATGCCATATTAGGGGCAGGTGCAGAAGCGTTGTCCTTGTTGTTTTTCTTCTTTTTTTTGGGTCTGTTTTTGTTTACCATCAAGTTAACCCATCTTTCCATCTCTACCACAGTCGTTTTGTGATACAATATTGTTGGTCATTACTCATTACAACACTATGTTTTACATTTACTCTGGGTTTTGTAATTGTTTTTTTTTTTTTTTCCCCCTTTTTGAGTCCATGAGAGACAGCTTAAAGAAGATTATAAAAGTTAAAAAGGAAAGTAGTGATGTTGTTATTGTTTTTGTCAGATTTATTGTCCTTTTGTATTTATTTTTCTTCTCTTTTTACTTAGTGGGAAATGTTAAGTTTTGGTTACAGTTGGTTTGTTCA 2054 42.41 MAALSKWPSLSLFALALVFFVTIALVRKEKTSEIRVKNDDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 49105909 49109857 - XM_039050541.1 Bhi12g01516 53328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01516 431 SMART amb_all 157 354 IPR002022 -
Bhi12g01516 431 Pfam Pectate lyase 169 346 IPR002022 -
Bhi12g01516 431 Gene3D - 82 424 IPR012334 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Bhi12g01516 431 PRINTS Pollen allergen Amb family signature 402 425 IPR018082 -
Bhi12g01516 431 SUPERFAMILY Pectin lyase-like 59 425 IPR011050 -
Bhi12g01516 431 PANTHER PECTATE LYASE 38 428 - -
Bhi12g01516 431 PANTHER PECTATE LYASE 18-RELATED 38 428 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01516 Bhi-Chr12:49105909 Bhi12g01517 Bhi-Chr12:49105909 0 tandem
Bhi01g00001 Bhi-Chr1:16751 Bhi12g01516 Bhi-Chr12:49105909 0 transposed
Bhi06g00597 Bhi-Chr6:13374485 Bhi12g01516 Bhi-Chr12:49105909 0 transposed
Bhi08g01685 Bhi-Chr8:47635954 Bhi12g01516 Bhi-Chr12:49105909 0 transposed
Bhi12g01516 Bhi-Chr12:49105909 Bhi05g00119 Bhi-Chr5:2138790 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01516 K01728 - csv:101217580 840.106