Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01517 TCACTGACATCACCACTGCTCGTTTTCCTCAGTTCTTCTTCTTCTTCCTTTTCCTTTTTTCTCTCTATATTTCTTCTTCTTCATAGTCTCTCTCTCTCTCTTGTTCGCTCTGGTTTTTCTTGAGAGTTTTGACGAGAGAGAGAGAGATATCAGTAATGGCGGCACTTAGCAAATGGCCTTCTCTGTCTCTCTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTGGTTCGCAAAGAAAAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATTAATGGCGACTAGGGTGAAGAATGATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATACTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAACTGGCACCGTAACCGTAAGCGTCTTGCAGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTTGTCACTGATTCGAGTGACCACGATCCGGTGAACCCAAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAACTTATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCCAATGGCGCTTGTATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCAACAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGACGGACTCGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCAGCTCCAACCAACCCCTTTGCCAAAGAGGTGACAAAGCGAGTCGAAACGCCAGAGAGCGAATGGAAGGGTTGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGATCCATCACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAAGACTTGTCCACGTGTCCTCCATTTTAACTTCAAACATCAAATGTTAAAAGCCTTTCCTCTTCCTGTTTGATTTCCATCATATCTCCCTTGTCCCTTCATTTATAATAGCCATTTAACAAAGTACACATTTTTTTTCCTTTCAAACTTGTTTTTAAAACCTTCATTCCTTCCACCATTGTTGTGTTCAATCTGTTGGTTGCTCAACCTCGGCCTGCTTCAGCTGAAAAGAAAATGCCATATTAGGGGCAGGTGCAGAAGCGTTGTCCTTGTTGTTTTTCTTCTTTTTTTTGGGTCTGTTTTTGTTTACCATCAAGTTAACCCATCTTTCCATCTCTACCACAGTCGTTTTGTGATACAATATTGTTGGTCATTACTCATTACAACACTATGTTTTACATTTACTCTGGGTTTTGTAATTGTTTTTTTTTTTTTTTCCCCCTTTTTGAGTCCATGAGAGACAGCTTAAAGAAGATTATAAAAGTTAAAAAGGAAAGTAGTGATGTTGTTATTGTTTTTGTCAGATTTATTGTCCTTTTGTATTTATTTTTCTTCTCTTTTTACTTAGTGGGAAATGTTAAGTTTTGGTTACAGTTGGTTTGTTCA 2108 42.55 MAALSKWPSLSLFALALVFFVTIALVRKEKTSEIRTVLATEFQSSSNSLMATRVKNDDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 49105909 49109857 - XM_039050540.1 Bhi12g01517 53329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01517 449 Pfam Pectate lyase 187 364 IPR002022 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Bhi12g01517 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Bhi12g01517 449 SMART amb_all 175 372 IPR002022 -
Bhi12g01517 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Bhi12g01517 449 Gene3D - 100 442 IPR012334 -
Bhi12g01517 449 PANTHER PECTATE LYASE 18-RELATED 20 446 IPR045032 GO:0030570
Bhi12g01517 449 PANTHER PECTATE LYASE 20 446 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi01g00001 Bhi12g01517 CCT
Bhi01g00001 Bhi12g01517 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00001 Bhi-Chr1:16751 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi05g00119 Bhi-Chr5:2138790 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi07g00768 Bhi-Chr7:28247294 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi07g00769 Bhi-Chr7:28247296 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi08g01685 Bhi-Chr8:47635954 Bhi12g01517 Bhi-Chr12:49105909 0 dispersed
Bhi11g03023 Bhi-Chr11:82254620 Bhi12g01517 Bhi-Chr12:49105909 2.72E-162 dispersed
Bhi12g01516 Bhi-Chr12:49105909 Bhi12g01517 Bhi-Chr12:49105909 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01517 K01728 - csv:101217580 876.7