Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01590 ATCCACGCGGCGGGTGAGTTGGGGAGGAAGAGAGATCGTTCCACGACCACGAGTGACTACACACTAAAATTCCAGAGAAAAAGAGAGAAAAAAGAACCCCTCAATTTAGGTTTTTCTTCCTCCTCCTCCTCCATCGCCATTCCCATCTTCTCTCTCTCTCTCTCTCTCTCTGCTGGTTGCCTCAGACACTGCAACGCCGCAATTCCTCATCGCCGTCGCCAGGCTTCGCATTCCATCTCTCATTTCTGCCTTCTATCTAAGGAGTATTAAATGTGCAAGTGACTGCGTAGCACTGAGGATTTCCACCTTGACCAGTTATTGATCTTTTAACATGGTCATTGCGGTCTTTGTTTGAGCATTAATTATCACATTATATCGTCCGTTTAAGTAGGGGCCGATGAGCACGTATAGTTGCTCAAAACAATACAGTAGAAGGAGTAAAAAGCAGACCCCGAGCAACTCTAATGATGAAAGTGCTGCTCGGACTAGGCCTCTCAGCTTTGAAGATATTATGCTTAGAAGGAAGAATAAAGGGTCAGCTGCTACTGTTGAGGTGGGTGCCACTGGTAGCCACTCAAGAAGGGAAAGCATAGATAAGCACAGTATTGATAATCGTGCATCTGAAAGGCATGTTCGTCACAGTAAAGGATCTTCTCTTGATGTGCAAAATCTCTCATTTGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACATTGTTGAAGGACAATATGGTGGTTAGGAGTGATAGAAATAATTATGAATCTGGATTGTCACTGATGAGTAAACTTAAATATGACAAGAATGGAAAGGATAAAAGACAGAAATATGGCCAGGAAAATCTTGGTTGGGAAAAAATTGACCAGAGTTCTAGAATTGATATTGATACTGAAACTGGAAAGAGGCATTCAAGAGATACAGCTGGCAAGGATAGACGTGAAGATCATGATAGGGGGAAATTTGAAAGAGAAAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAACAGAGACAAGTACAATGCAAAGAGACATGACCATGGTAAACATCATGACCTAGAAAATAGAGAAAGAAAGGAAGCTAAAGTATCATTAACTTCACATTATGAAGATTCTAGATTGAAAAGAAGACGGAAAAGAAGCCCAGATCGTGAAAGTAGACATAGAAGATCTGTTTCACTTTCTCCAAGGCCGCACAAGCACTCAACTAAGTTAACTAGGCAGAAGGAGTTGCCATTAGAGTCTCATGTAAAGAAGTCTGGAAGATGGCGTTCTGATAGTGATAGAACAGGGGATTTTAGCAACACTTCCAATAGCCAATACCGGCGACATTCTGGGTCAACAAGTGGGCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCTTCACCTGTTCAATCACCAGAGAAGAAAAATGAAGTGTTGGATCTTCCTCCAACGGAAAAGGTTGGATTATTTTCTGGCTCGGTTACTTCCAACTTCCAGCCACCAAATCCTACTGTTTCCTTGGGCATTAGTAATGATCAATCTGGTGGTACACTCTTTTCTTCTGCTATGGGGAAATCTTTATCAGGGGTTTCTTCAAATAATATAGCAATGAAGACAAAGGTTTCTCTTGATTTGATTCAGCTGACCCAAGCTACTCGGCCAATGAGGAGGCTTTATATTGAAAACTTACCACATTCTGCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTTACATCTTCAGGCGTTAATCACATCGAAGGAACCCAACCATGTATTAGTTGTATTATACACAAAGATAGGGGGCAAGCTCTTGTCGAATTTCTTACACCTGAGGATGCTTCAGCAGCTCTTTCATTTGATGGAAGTGACTTCTCTGGCTCCATTCTAAAGATTCGGCGACCAAAAGATTATATCGAAATTGTAACTGGTGACCTGGACAAGTCGGTGCAGGTAGTAAATAAAATCAGTGATGTTGTCGAGGACTCACCAAATAAGATTATTGTTGCTGGGATCTCAAATAGAATATCACCCAAAATGCTTAGGGATATTGTTACTGCATTTGGACGTTTGAAGGCCTATCACTTTGAGATGAACGATGATCTTAATGAACCTTGTGCCTTTTTGGAGTACGTCGACGAATCAGTTGTGTCCAAAGCTTGTGCTGGTCTGAATGGTATGAAGATTGGAGGGGAAATACTAAAAGTGTTTCCGGCAGTTCGTTTTGCATCAACGGAACATCATGGATGTCAACCATGTTATGGGATCCCAGAGCATGTAAAACCTCTTCTTCAACAGTCATCAGTAGTGTTAAAAGTTAATAATGTGTTTAATGCAGATGTCCTCCCAGTACTCTCTGAGTCGGACATTGACGAAGTTCTTGAAGATATTCGGTTTGAATGTGCTAGGTTTGGGACAGTTAAATCCTTGAATTTTGTAAAGCCATGCAATGGATGTATCAGTGCTGAAGAAGAATACAAGAAAATTAGTGATGTCACTGACGTGGAGGTCAAACATGAGATTCAGGAAAACAGCACAATGGTGATTTCAAGAAATAGTAATGATCTTGAAGATAACAACCCTAACCTTGATAATTGCCCCAATGATACCAATCAGAAGCAGGGTAATAGACATCAAGACGAAGGTGTGGAGGGCAAATTCTGTCAAATGGGTAACGATAATGCTTCATGTTTTGAAGTAGGTTGTGAGAATGCTTCAGAAAGAATCCCTCAAGAAATCTCTGAACAGCGACGCAGCCCAGAAATTGAACTTCAGAATGCAAAAGCTGAAATAATTGAAACTGATGAAACTGGCTCGGATAAGAAATTGGTGTGTCCAGATGATTCATCTATGGTGGTGGCTGATAATGAGAAGAAAGCTCTAAATGGATTGGACCCCATGGTGAGAACAGGTTCGGGTGCATTTGAGAAAAGCGAAAAGAAGGATCCTGGTAATAATGTGGAGAGTTTATTTGTGTTGGGGAGTGTCTTTGTTGAGTTTGGTAGAATGGAAGCCGCGTGTATGGCTGCACATTCTTTACATGGTAGGATTTATGATGGACAAGAGATTAGCATTGAGTACATTCCCCATGATCTCTACCGGAAGAGGTTTCCTAAATGACTACATTTGAATACTGAATGTGGTGATTAACTGGTCGCTGAGGTCGTTTCACATGAAAGCTCCACTTATTAGCAAATTTCATTACTGAAGGTATTTGTTAATGGCTCATTTTAGGCAAGCCTCGATATTTTTTTAATCATTTGGCTCGAAATCTGAAGCATGCTATATGGTGAAACAAGTCATTTCTCAAGCACCATATGGATAATTTGCTGAAATCAAAGCCTGGGAGAGTATAACCTCCCCCACTTGAAAGCCTTTTAACCTGCCCCTCCCTGTGTTTCTGATAGATTTTCTTTATATGCTCAACAGGTCCAAGGATCTGGGTTATGGACATGAAAGATTTACGGGTGAAGATATGGTCATCTTTAAACATTACTTCCATATCTATTACCCGTTTATTTCTTTCAGCGGGAGCTCTCGATAATCTCATGTCTAATCTTTGCTGTAGATGATCTCTCATTCACAGTTGAATTAGTTACTTTAATACAAGAGATCATCGTTCTTCATCATTGTTTTGTTTACCTTACAATAGTATTTAGAAATATAGTACATAATGGGAGTTGGCCAATCCATAAAGTTCATATGGAGATGCGTACATAACAGTAATGTGCTAGTGGTCAGATTGCCTTAAATGATAAACATTTTTAGTAGTTAAAGTTCTGGTAATAATCTTCTTTTTGCATGTTTTTCAGC 3835 40.26 MSTYSCSKQYSRRSKKQTPSNSNDESAARTRPLSFEDIMLRRKNKGSAATVEVGATGSHSRRESIDKHSIDNRASERHVRHSKGSSLDVQNLSFEESAKDSSRRKKEETLLKDNMVVRSDRNNYESGLSLMSKLKYDKNGKDKRQKYGQENLGWEKIDQSSRIDIDTETGKRHSRDTAGKDRREDHDRGKFERESKRKSQNGDDDRNRDKYNAKRHDHGKHHDLENRERKEAKVSLTSHYEDSRLKRRRKRSPDRESRHRRSVSLSPRPHKHSTKLTRQKELPLESHVKKSGRWRSDSDRTGDFSNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPVQSPEKKNEVLDLPPTEKVGLFSGSVTSNFQPPNPTVSLGISNDQSGGTLFSSAMGKSLSGVSSNNIAMKTKVSLDLIQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALSFDGSDFSGSILKIRRPKDYIEIVTGDLDKSVQVVNKISDVVEDSPNKIIVAGISNRISPKMLRDIVTAFGRLKAYHFEMNDDLNEPCAFLEYVDESVVSKACAGLNGMKIGGEILKVFPAVRFASTEHHGCQPCYGIPEHVKPLLQQSSVVLKVNNVFNADVLPVLSESDIDEVLEDIRFECARFGTVKSLNFVKPCNGCISAEEEYKKISDVTDVEVKHEIQENSTMVISRNSNDLEDNNPNLDNCPNDTNQKQGNRHQDEGVEGKFCQMGNDNASCFEVGCENASERIPQEISEQRRSPEIELQNAKAEIIETDETGSDKKLVCPDDSSMVVADNEKKALNGLDPMVRTGSGAFEKSEKKDPGNNVESLFVLGSVFVEFGRMEAACMAAHSLHGRIYDGQEISIEYIPHDLYRKRFPK 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 51780015 51790540 + XM_039050815.1 Bhi12g01590 53402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01590 914 Gene3D - 429 611 IPR012677 -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 59 84 - -
Bhi12g01590 914 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 608 IPR000504 GO:0003723
Bhi12g01590 914 MobiDBLite consensus disorder prediction 727 748 - -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 135 249 - -
Bhi12g01590 914 Gene3D - 531 589 IPR012677 -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 97 114 - -
Bhi12g01590 914 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 616 IPR000504 GO:0003723
Bhi12g01590 914 MobiDBLite consensus disorder prediction 1 114 - -
Bhi12g01590 914 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 512 IPR000504 GO:0003723
Bhi12g01590 914 SUPERFAMILY RNA-binding domain, RBD 416 512 IPR035979 GO:0003676
Bhi12g01590 914 PANTHER RNA-BINDING PROTEIN 1 911 - -
Bhi12g01590 914 SUPERFAMILY RNA-binding domain, RBD 534 616 IPR035979 GO:0003676
Bhi12g01590 914 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 911 - -
Bhi12g01590 914 Gene3D - 640 732 IPR012677 -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 276 300 - -
Bhi12g01590 914 SMART rrm1_1 430 508 IPR000504 GO:0003723
Bhi12g01590 914 SMART rrm1_1 541 612 IPR000504 GO:0003723
Bhi12g01590 914 MobiDBLite consensus disorder prediction 727 756 - -
Bhi12g01590 914 Gene3D - 798 914 IPR012677 -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 301 325 - -
Bhi12g01590 914 SUPERFAMILY RNA-binding domain, RBD 633 911 IPR035979 GO:0003676
Bhi12g01590 914 MobiDBLite consensus disorder prediction 1 29 - -
Bhi12g01590 914 MobiDBLite consensus disorder prediction 133 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01590 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - csv:101213128 1217.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01590 Bhi-Chr12:51780015 Bhi04g02090 Bhi-Chr4:56440465 3.44E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35