Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01731 AAAAGGAAGCCCCCCACCAAGAATATTTGGATGAAATTGAAACAGCTTCCTATTCCCTCACAATTCTGAATTCATCTTCTTCTTTTCCTCTTATTCCTTGTTTCAACAACTCCTCTTCCTTTTCTTCAAAATTTTCTTCTCTCTGCATCTTCCTAATCCTTAATCGCTACTGCAACAAGATCACGGTTAACTTTCCAGGATTCATCTCTTCTGTTTCGAATGGCTCGTGTTCGGAATTTCAGTTCTCAAGGAGGGATGGTTAATGATGATTACTGGGCCACCCTGAATCGCTATGATGTCAAAAACCACCATCAAAAGACAAGTAGGAGCAGTTATTATGATTATGGCTATAGCAGCAACCATTTTGAATTCCTGGGGCAGTATAAAGAGCAGGTCGATAGGTCTATTTATGCAAGGCCTGATACTTTGAACTCCATCAAGCCTCATAACTCTCAGTCTCTTAAGAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGGTATCATTGGCAGCCAAGGACATATGATAATGGACCTTCAATCTATAGCAATTTGGTCCACCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAACGAGATCGCACAATAATGGAAGACGATGAGCCTTTGTTTATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATAGATACCATACGGGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCTCAGACTACCATTGGCACTGCAATGATTCTATGCCATCGGTTTTTTGTTCGAAGGTCACATGCTTGTCATGATAGATTTTTGATTGCCACATCTGCACTTTTCCTTGCTGCAAAATCAGAGGAGACACCACGACCTTTGAACAACGTCTTGCGAGCTTCATGTGAAATTCTGCACAAACAGGATTTTAATGTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGCGTAACTGAGGCTGAGCAATTGATACTGACTACTCTAAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCTGTTCTTAATAAGATAGGTCTTTCACAGTCGATCTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGGCTAAGGACCTCACTCTGGCTTCAGTTTAAACCCCACCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTATTGAATATGGACTTTGCTCCTTATCAAAACATCTTGCAAGAGTTCCAAGCAACACCAGCTATTCTCCAAGATGTGGCTCAGCAGTTGATGGAGCTCTTCTAAAGGGAAAGCAGGATAAAGATGGAACCCAGTGTAGTGAAATGATGGGAAAGCATAACATATTTGTGATTCTACGTCCAGTCTTCAATAGTTAAATCCTGACAGTTGCTTAGGTTATAGTGTGACTATGTTGGAAAGTTTAACATGAATGGTTCTCATTCTCTTTCCATGTGCAAGACAGTGCTTTACAAGTACAGTAGGAATACATGTATTCAATTGAGGAACGGATGGTTATACAAAAAGCCTCACTTCTGGTCT 1605 41.56 MARVRNFSSQGGMVNDDYWATLNRYDVKNHHQKTSRSSYYDYGYSSNHFEFLGQYKEQVDRSIYARPDTLNSIKPHNSQSLKRRKFSASRWEDSGRYHWQPRTYDNGPSIYSNLVHPPPRSNNDVSTSASCKRDRTIMEDDEPLFMSRDEIERCSPSRKDGIDTIRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNVLSYMLPVDWFEQYRESVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSILVNLALNLISEGLRTSLWLQFKPHQIAAGAAYLSAKLLNMDFAPYQNILQEFQATPAILQDVAQQLMELF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 55945440 55953407 - XM_039018651.1 Bhi12g01731 53543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01731 376 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 71 376 - -
Bhi12g01731 376 SUPERFAMILY Cyclin-like 144 286 IPR036915 -
Bhi12g01731 376 CDD CYCLIN 285 346 IPR013763 -
Bhi12g01731 376 SUPERFAMILY Cyclin-like 287 376 IPR036915 -
Bhi12g01731 376 Gene3D - 286 376 - -
Bhi12g01731 376 SMART cyclin_7 291 374 IPR013763 -
Bhi12g01731 376 SMART cyclin_7 176 278 IPR013763 -
Bhi12g01731 376 Gene3D - 133 284 - -
Bhi12g01731 376 Pfam Cyclin, N-terminal domain 157 285 IPR006671 -
Bhi12g01731 376 CDD CYCLIN 170 248 IPR013763 -
Bhi12g01731 376 PANTHER CYCLIN 71 376 IPR043198 GO:0006357|GO:0016538
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01731 K15188 CCNT; cyclin T - csv:101216477 729.169
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00958 Bhi-Chr10:19620294 Bhi12g01731 Bhi-Chr12:55945440 9.81E-75 dispersed
Bhi10g00959 Bhi-Chr10:19620294 Bhi12g01731 Bhi-Chr12:55945440 1.08E-74 dispersed
Bhi12g01731 Bhi-Chr12:55945440 Bhi12g01733 Bhi-Chr12:55946913 0 dispersed
Bhi12g01731 Bhi-Chr12:55945440 Bhi12g01732 Bhi-Chr12:55946913 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g1886 . . . Cma17g00250 . . . Cpe17g00140 Bhi12g01731 Tan06g2538 Cmetu05g0588 . Hepe03g0182 . Lcy13g0265 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38