Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01733 AAAAGGAAGCCCCCCACCAAGAATATTTGGATGAAATTGAAACAGCTTCCTATTCCCTCACAATTCTGAATTCATCTTCTTCTTTTCCTCTTATTCCTTGTTTCAACAACTCCTCTTCCTTTTCTTCAAAATTTTCTTCTCTCTGCATCTTCCTAATCCTTAATCGCTACTGCAACAAGATCACGGTTAACTTTCCAGGATTCATCTCTTCTGTTTCGAATGGCTCGTGTTCGGAATTTCAGTTCTCAAGGAGGGATGGTTAATGATGATTACTGGGCCACCCTGAATCGCTATGATGTCAAAAACCACCATCAAAAGACAAGTAGGAGCAGTTATTATGATTATGGCTATAGCAGCAACCATTTTGAATTCCTGGGGCAGTATAAAGAGCAGGTCGATAGGTCTATTTATGCAAGGCCTGATACTTTGAACTCCATCAAGCCTCATAACTCTCAGTCTCTTAAGAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGGAGGTATCATTGGCAGCCAAGGACATATGATAATGGACCTTCAATCTATAGCAATTTGGTCCACCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAACGAGATCGCACAATAATGGAAGACGATGAGCCTTTGTTTATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATAGATACCATACGGGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCTCAGACTACCATTGGCACTGCAATGATTCTATGCCATCGGTTTTTTGTTCGAAGGTCACATGCTTGTCATGATAGATTTTTGATTGCCACATCTGCACTTTTCCTTGCTGCAAAATCAGAGGAGACACCACGACCTTTGAACAACGTCTTGCGAGCTTCATGTGAAATTCTGCACAAACAGGATTTTAATGTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGCGTAACTGAGGCTGAGCAATTGATACTGACTACTCTAAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCTGTTCTTAATAAGATAGGTCTTTCACAGTCGATCTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGGTCAATGATGTAACATTAAAAATTAGATTTGGGATATGTGGGTGCAAGAATCTCAGTGGAATGACAGATTTCTTGAATTTTGGCGTTGATTGTGACACGAAAGATGATGCACTGGTGATCTTCTTTCCCTTTGGGGATCAAAATGGTTTGTTACTTGTGTCAATTGTTTTCTTGTTAGAGCGAGCTACCCTTGCACATTTATCCTACTATGAATTATTGATTCTTCTGGCATGCGTATAATTTGCAGGATCTATGCACGATTAACATGCTCGCCTATTTGATATACTTAGCTGGCGGAATGATATGCTGTTCATGGAAACTTTTGTTTTACAAGTGAAGTAATTTTAACCATGAATAAACCCCATCGACTTGGTACTTGGTGCTAATGATTGCCAATGAGCCTACTGTGTCACTTTCTATCTTCCCGTAGCCAAAAATATATATATTTTCCTCCTCTCCCTGGAGCGTCCTCTCTGAGCCATTCATTTGCCTATACCTTGAAAAATATGGAGTTTTTACTTCTGAACTTTTTGAATCAGAAGGGCGTGCTTGTGAGATTGGATCTGCTATCCATTGTCTTTATAACCTAGAGAACCGCTGCCAATGATCTTGTTTTTGTTCTTATGTCCCTGTGATGGATGGTCAAGTGAGTTGAATAGAGAATTTTTTTCTGATCAACTTCTTTGGACGAGCTTCTATTTAGCACAAAATAAGTCACAATAGGGATTTGGTTCTATGATAAAATTCTTGGTCTTTCCTTTCAAGTTTCAAGAATCAACTGTACCTATGACATGCCAACAGTGAGCTTAGCTCAACTTACATAAAGTGTCTACCCTCGACTAAAAGGTTTGAGATTCGAATCTTCCCACCCGGCCACCCCAAGTTGAACTCAGAAAAAAGAAAACAAAAACATGTCAAGCCACTGGGTTCTTGATGTTCCGTTAGCACGTATACAAGTAAGCCCTTCAGTTGAAAACCTTAAATTTGCACCAACTTATGTTTGTAAGTCGGGTATTTGCTGACTGGTGTCTATACCTGGTAAATTATCATCTGGTATTTTCATCATTTTGAGTCAGAGAGGGTGGAACTCATATGTGGTGTTACTCTGACTGGTTCAAGACAGGTGGATTTTGATCAGGGATATGGGTTATCTTGATAAGCATGGAATGTGAATTGTGGAAGATCATTAAAAAAATTAAAATAAAATGATTTTGGATCTCTTCCTCCCACAAAGAGAATAGAAAATGTATGCATTCTTATCTAGCAGCCAGCGGGCTTTTTTTTCCTTTACTGTGTTAGGCCTCCTTCATTTTCCATTTTTCTCCCGTCCTTGATTAATATGTAATATATAACTGAAACCCTTTTAACTTATTTTCTTGAAGATGACATTTTTTCTCTGCCTTTTGTATTTTCATCCAAATTAAACCTGAAGTTTTGTCGTTTCACATAAATGTCATAATACTGACATTATTTTATGACAAAAATATATTTTACATTGGGATGTTTTGATTCTGAAATTTATTTGCTTATATGTAAAAATTTTATGGCTTTTTTCCCCTTCTCATAGCAGTTCTTTTTTTGTTTTTCTTTTTTCCTTGCATTTTCACATTTTGCTTTTGGTGTGTTCTGGCCCCTGTTGCTTTTGGTGTATCTTTTAAAAATCATCATGTAACTATCTACATCTCTTAGCAATTTTGGAATTTTCAAGAAACTATATATATATTTTTTAAAATTCTCTTAACAATCATCATACCATTGGACATTCAACTGATTGGTCTTTTCTGTGATGCTCCTGTTGTCAAATAAATACCGTTCTCTTGTTATTTGATTTCTGGATTTTGTAAGCTATTAAAATTTTGAAACTATTGTGAAGTTGTTTCAATTTCCCTCATTTCGTTTCTGTGGAGGATTGAATCCTTTCTCTCTGTTTGACTTTTATTTTTAATAGTTTATTCTGTTATTCAGGACATTAAAACTTTTTAATGTATGTTGTAAAAATTTAGCACCGACCTATAGTTGGAAAGATGCATGCCTGGCCTATTTCATCCTGCACTGGCTAAGATTATTTGAATGAATCTGTAAATTTTTTTGTTTTTGTTTTGTTATGATGTATCTATTGACCAGTCATTTTACATGTGATTTTAGGAAATCCTGAAGGTGTAAACTTTTGAAATATTCAGTGACATCAAGGTTTTGCATTTAATTTGTTGGACTTAAAAATTGTAAATTTAATTCCACCCAGGTGATGTCTGTTCCAATTTATATCATCATTGGAATCACGATCATCAAATAAATAACTCGTGATCTGCATGCTCATGCACGTATAAAGGTAGCTTTGTCCATTGAAATTCCACCCTCTCCTGCCCGCCCACCCACCAACCAAAACAGTTAAAAAACCACCTACCCAAAGACTGAGCAAAATTACCTTCAGGGTACAAACATTACAATAGATGCAACTTCCCGTGTCAAGGTAGTTTTGTCTGTAGAAACCCTACCCTCCCCCACCCATCTATGTTCCCATCAAAGAGAGAAGAACAAAACTCATGTCCCAGCCCTAGACTGGGAGAAACATTACCTTTAATTAAGGTACAAGCTTTACGATAGATGCAACTTTCCATAAACTTGAGTTCTTACCTACAGAGTACTGACAAAACAACTCATGCTGACGACCAGAAAAATGTAATGACCAGTACACTATATATTTATATACGTATATGCTGTATATATGTGTGTGGAAGAATTATCTTTTCTTCTCATGTGTATTTTATTCAACCGTGGGAATTATGGGTTATATCTGTATGTGGGGTTAGCTTGCATGCTTTCAAGCACAATGAGATGAGAGTGCTTGATGATATTCCAGTCCAGATCAACATTTACGTCATTTAGAGCTGAAGATGGTGGGTTGCTTTGAGAAGTATGATTGTTTGCAATATGCCACAACCTCCTGTCTTTTAGTTTGGGTTGCATTAGTCTGGAATCAAAAGCCCCTGCTGCCAAATTTACCTGGGAGTTTGATGTATTCTGTATATGGGGTATAACATATATCATATGATAATGATA 4232 37.31 MARVRNFSSQGGMVNDDYWATLNRYDVKNHHQKTSRSSYYDYGYSSNHFEFLGQYKEQVDRSIYARPDTLNSIKPHNSQSLKRRKFSASRWEDSGRYHWQPRTYDNGPSIYSNLVHPPPRSNNDVSTSASCKRDRTIMEDDEPLFMSRDEIERCSPSRKDGIDTIRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNVLSYMLPVDWFEQYRESVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSILVNLALNLISEGSMM 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 55946913 55953407 - XM_039018654.1 Bhi12g01733 53545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01733 321 SUPERFAMILY Cyclin-like 144 286 IPR036915 -
Bhi12g01733 321 Gene3D - 127 310 - -
Bhi12g01733 321 Pfam Cyclin, N-terminal domain 157 285 IPR006671 -
Bhi12g01733 321 PANTHER CYCLIN-T1-4-LIKE ISOFORM X1 71 318 - -
Bhi12g01733 321 SMART cyclin_7 176 278 IPR013763 -
Bhi12g01733 321 PANTHER CYCLIN 71 318 IPR043198 GO:0006357|GO:0016538
Bhi12g01733 321 CDD CYCLIN 170 248 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01733 K15188 CCNT; cyclin T - csv:101216477 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01731 Bhi-Chr12:55945440 Bhi12g01733 Bhi-Chr12:55946913 0 dispersed
Bhi12g01732 Bhi-Chr12:55946913 Bhi12g01733 Bhi-Chr12:55946913 0 tandem
Bhi12g01733 Bhi-Chr12:55946913 Bhi12g01734 Bhi-Chr12:55946913 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g417 . . . . Bpe04g01188 . Bma04g01178 . Cmo08g01148 Cmo17g00265 . . . . . . . . . . . . . . Cla06g00537 Cam06g0579 Cec06g0576 Cco06g0584 Clacu06g0566 Cmu06g0560 Cre06g1328 Cone14ag0812 Cone15ag0811 . . . . Chy11g01438 . . . . . . . . . . . . Cma08g01177 Cma17g00278 Car08g01053 Car17g00253 Cpe12g00231 Cpe17g00119 Bhi12g01733 . . . . . . . . . . . . . Lsi09g01365 . . Cme11g01943
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38