Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01742 ACCAAAAATAATTAATTAAAATTCAATTCAATAATTAAAAAGAAAAAAAAATCATCCAAAATTTCCCGAAACTCAGATTCATTTATCTCTCACTGTCTTCCTTCGAATTCGTTTTCCATATCCAATCCATTCCCCCATGATCCGAAGCTCAATCCACAGACCTCCAATGGCTTCTCTCCCACCCTCAATCCCCGATTTTCCGCTCAATCTTTGATCATTTCTTCCTTCTTCATCCTCTTCTCCATCCAAAATCCTCCCAATCCATGTCTCTCAAGAGCATCTTTCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCACCCGAGCCCACGGACGCCCTGGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTTTGATGAGAATCGAGGCGTCCGAGACCTCGTGGCCACCGAGGAAAAGTGTCGTCTCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAGGGAGATCGTTAAAACGCCGGAGGTTTCTGGCAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCGAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAAGTGATGATGGTAAATTTCTACTTGCTGCTCGCAAATGCAAGCGCCCGACCTACACGGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCCGGAGCTAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAACGTATTGGGATCAAGGGGTCCAAGGAGAATGCAGTGTGTCATGGATGCTATTCCCGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCCACGCCGACCGAGCTTTCTTTGAGCAACGTGGAATTGTTTCCATCATTCCCTTTCTTAAGGTCGAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCACGAGCAGCTTCAGTGCTGGTGTCTCAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAACTAGTCGCTTCTCCGGAAAATGATCCACCTACACTAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCAGGCTTTTGCGATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGACAGACACATCATTTAACAGGGAACGGACGCTCAGTTTGAAGGTCTACTGATGGCTTCTGGCAATAAAACCGTTTATAAATGGTAAGTTAACGTGATAGCGGAACGATGGCTATGTTCCGAAACTCATAGGAAGTTGCTTCTTTCGTGGTGGTTTCTTTGCATCGGTTACAATTTTCTAGGGTTTGTTTTTGAGGGGATGAATCGCAGAGAAACTTGCAAAATTTTAAGACTTCTTTATTTGATTGTGATATGTATATTTCTTCAAGTTTGTGTAAATAATGATTTTTTTTTTTTTTTCAATTGAAGAAGTTGAATGGCAGTGGTTGACTGTTAAAATCAGCTATTCATTTTCATTAGACATTTTCGTTCCTTGTTTGTGTAGTTTTGTTGGCCTTCTTCACTCATGGATATGTCCAAAGTTTCTCCCCTTTTTT 1858 43.7 MSLKSIFQDMRSRSRCVVQDASAPEPTDALDQSCWANMPQELLREVLMRIEASETSWPPRKSVVSCAGVCRSWRAITREIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 56464738 56468735 - XM_039018793.1 Bhi12g01742 53554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01742 386 PANTHER TUBBY-RELATED 1 386 - -
Bhi12g01742 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Bhi12g01742 386 Pfam Tub family 97 381 IPR000007 -
Bhi12g01742 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Bhi12g01742 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Bhi12g01742 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Bhi12g01742 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
Bhi12g01742 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Bhi12g01742 386 Gene3D - 28 83 - -
Bhi12g01742 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Bhi12g01742 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Bhi12g01742 386 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi01g00948 Bhi12g01742 CCT
Bhi01g00948 Bhi12g01742 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00948 Bhi-Chr1:17406519 Bhi12g01742 Bhi-Chr12:56464738 0 dispersed
Bhi01g03152 Bhi-Chr1:79309623 Bhi12g01742 Bhi-Chr12:56464738 3.03E-134 dispersed
Bhi04g02131 Bhi-Chr4:57228311 Bhi12g01742 Bhi-Chr12:56464738 7.13E-152 dispersed
Bhi12g01742 Bhi-Chr12:56464738 Bhi01g02370 Bhi-Chr1:57752923 4.91E-155 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2696 PF01167 Tub 1.90E-110 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01742 K19600 - csv:101203437 755.362