Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01748 TTTATTAATATTATTATGATTATGATTATTATTATTTTAATTCGGAACATACTCCTAGTCCTCTTCGGTGACATCCCGCCGCTACGATCAGATTCCATTCGCTCACTCTATTTTTCCCTCCAAAACCCTCACAGTGCCTTTCATCTTCCCGCCACATCTTTCACATTCTAACTCTTCTCCGTACTCTCTTCCGATTTGCTTCTCCGGCGACGGCAAACTATTTGCGGGGGCAGGAGATTTTGAAAATGGCTCCCTTTGGAAGTGATCGCATGGACATTGATTGTACGGATACCGAAATATTTGACGGCCATCTTTCACCGCCCACATGTTCCGGTGAGGAATCAGATAAAGCTTCATATTCTTCAGGAACAGTTGATTTTTATGATGACGAGTTTGAAACTCAAGTAGTGAATCTTGCTGGAGAAACTCAAGTGGTGGATCCTGTAAATGCTGAGTTTGAAACTCAATTAGTGAATCCCCATGGAGAAACTCAAGTGTTTGATATTGAGTGTGAAACCCAAATCTTGAGTCACTGTGATGATACCCAGCTACTTGATGATCCCATTCCTGAATGTGTCGGAACAATGGACTTTGACACTCAAATATTGAATGATTTTGATTATGAAATGGCTGGTGATTGTTACGATGATGAAGGAACAGAGACAACTGAAATTAATGTCGATGACGGTCTATCTAGTGATGAATCAGCCCAAAGACTTGATCAATCAGTGGAGAGGAATGGCCAATCGGCCTCTGTGCTTGGACGGAATGTGAGGAAAGATTTAGAGGTGTTACCGAATACTTTACCGGTTAAAAAATGTAATTCAGGACCCACACGACTTTCTTCATTACGTGCAGCCTCATTTCGTGCCTCTGGTTTAGCAGCCCGTTGTTATGCCATGAAGACTAGAGACATTGGACCTTCTGTTATGATTGACAAGGATATAGAAAAATCATCCTTCAAAGATAATCACATTGACCGGCAGAATGGTCATGGGCAATACAGTGTGAATGATGGGGATTCAGGTAACATTAAGTGCAGGGTTGGCAGTTCAGCAGTGAGAAAGCTTTTTACTGAGGATTACACACCTGTTGGAGATTTAGGAGATCTTCACACAAGCCATGATATCAGTGACCTTGACCCACATCAGTTAACTGCCTGTGATGGCGATGGCGATCAGTTGGCAGGGTTAAGTTATGTTGACTCTCAAGAACCCGGGGAATTAACACAGGACAATGCTCTTGATTTTGTTGAAAATTTTCTTAAAGATAATCCTATAGAGTTTGATCTAGATGGAGGTATGCATAAATTGGATGCTATGGTACAACCAAAGTTGGTTCCTAATCCAAGGGGACAATATAATCTGGCTAACATCGTTAACTGTATAAGAACAGTTGGAGAATCAAGAGTTTTTGATTGGGATGATAATCGGGAAGATGAAGGAGGTGGCGATATTTTCTGCAGAAAGAAGGAAGAGTTCTTCACTGAACCTCGAAAATCGAAAGGAAGAAGATTAGACCGGAATGGTGACAAGGAAGCATCTTTGAGTATCCAAAATATGAAATCGAGGTTATTTTGTTCTGATTCACGTCTAGAGTTGAGAAAAGGAAAAGAGAATAATGAGTCATCTCGAGAAGCCAGCGTCAAATGCAAAAAGAACATATCCTATAAGTTGAATCAGGAGAATGATGGTGATGCATGTAGGGGAGAGTTGGAAGACAATGACGTCCAGCCTGATCAGCAAGAAGTCTCTAATGTAGGTTTTGATACTCAGATGGCAGCTGAGGCGATGGAAGCATTATTCAATGATGAGAATGTCCATAAGTTAGTTCATAATGAAGAAAATCAACATTTGGAAAATATTCCAATGGATTCTTTTAGAGGTTCTCGTTCTAGAAAGCCAGACTCTAGCTCGAAATCAAGGCGATCCTCTAGGGGACATGCTTCTAGTTCTGAGGTTGCCCCTAGGCAGTCCAAAGAAAGAAATCAGAAGTTTTCTGGAGATCTCATGAAGGTGTGTAGAAATGAGACTCTGAAATTGTCAGAGAGGAGTAAGAAAAGAGATGCTGATGCAATGAAAGGGAATGAAAACAATGGCCGTGACTCCAATGATGGGTGTAACATGACTAAGAAGCAGCTTTTACGTGGAAAAGTTGTTGAGGTTTCACCTGTTGCACGTCGAACTAGGCAATCCATGATAGCAAATCAATCAAAAAAGGATCAAATTGCATCTGATGGGTGTGAGCAGTCAATTTTACGTGGAAAAGTTGTTGAGGTTTCACCTGTTGCACGTCGAACTAGGCAATCCATGATAGCAAATCAATCAAAAAAGGATAAAATTGCATCTGATGGATGTGAGCAGTCAATTTCAAAGGTAGGTTCATTAATCAAGAAAAGTAGTGGTGATCGAGCCATTAGGGATTCTGAAGCTAAGAGAACTAAATCTCTAGAGGTAGCTTCCAAGACTCTAAAGACAAAGTCAAAAGGCACTGAAAATTATGCAAAAAACTCCATAGGAGAACGAGGATTGTGTGATATGTTAGCTGGTCAGGTAAGTCTGCCTGATGATTTACTTGGACAAACTATTGATAGGCGCAAGAGGTCATGTAACATGAAGAAAACACGATCGTCGATATGTGTTCTTTCACCTCCTTTAAATATGAACTTGGAAAGAAGAACTGTCGGTAGAACAAGTGCAGAAAAAGCTCATGGTGGAACTATAACTGCTGATATGAATGGTCAATTGTCCATTGAAAATTCCAACAGGCCAAATTTCGTTCAGCAGTTAAATAAAAAGAATGATGGATGTTCGGTTTCTTCTATTGTAAAGACTGTGTCTGATGAATCTCCTAGTAAAAGGCACAAACCATCTATCACGGTTTGTACTACTCCACCTGATAACTGTATGACGCCTATAAATACTGCATCACCTGTTTGTATAGGCAGCGAATATTACAAACAATCATGCAAAAAGAACCTCTCAAAATCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCTCCGGGGCTTGTTTCGAGATCTTTTCCAACTGAGTCAAGAAAGAGAAAAGATATGAATGATGTTCGAGTCTTGTATAGCCAACACCTAGATGAGGACATAATCAAACAGCAAAAGAAGACGTTGACTCGCCTAGGGGTTACTGTGGTATCCTCCATGACTGAGGCAACACATTTCATAGCCGATAAATTTGTACGTACAAGGAATATGTTAGAAGCCATCGCTCTGGGTAAGCTTGTGGTGACACACCAATGGATTGAGAGTTGTGGGCAGGCGAGGTGCTTCATTGATGAAAAAAATCACATCCTACGAGATACCAAAAAGGAGAAGGAATTTGGATTTAGCATGCCAGGATCATTGGCGTGTGCTCGCGAGCGTCCTCTTCTAGAGGGTCGACGAGTGTTGATTACACCAAATACAAAGCCTGGGAAAGCCATCATTTCGAGCTTGGTCAAGGCGGTAAAGGGTCAAGCGGTAGAGAGGATTGGGAGGTCTACGCTGAAAGATGATCAAATTCCAGATGATTTGTTGGTTTTGTCGTGTGAAGAAGATTATGATGAGTGCATACCTTTTCTTGAAAAAGGCGCTGCAGTGTATAGTTCCGAGCTGCTACTTAATGGGATCGTAACGCAGAAGCTTGAGTTTGAAAGGCATTGTCTTTTCGTAGATCACGTGAAGAGGACTCGTTCGACGATATGGCTCAAGAAAGATGGCAATAAGTTCCATCCTGTTACCAAACATCAGTAACTTCATTTCGTAATAGTCAATATTCTGTTGGGGTATGCTCTTTCTAGTAGGTGTTACTTTGTGTATATTATAGAGTATAGCTGCTCAAGAAAGATGCCCTATGTTTTAGATTTCATAGTTTCATGTAAATGTTTAGGCTATTAGGGAAAGTGCCGTACATGTTACATCTTTAGTTATTTATATTATTGTCATAAGCTTGTAATATGATCGAGTCATCTACTATAAATTGAGTATCTTAATGCAATCTTCTATATAATGAATTATGTGACATTAATTAA 4045 40.27 MAPFGSDRMDIDCTDTEIFDGHLSPPTCSGEESDKASYSSGTVDFYDDEFETQVVNLAGETQVVDPVNAEFETQLVNPHGETQVFDIECETQILSHCDDTQLLDDPIPECVGTMDFDTQILNDFDYEMAGDCYDDEGTETTEINVDDGLSSDESAQRLDQSVERNGQSASVLGRNVRKDLEVLPNTLPVKKCNSGPTRLSSLRAASFRASGLAARCYAMKTRDIGPSVMIDKDIEKSSFKDNHIDRQNGHGQYSVNDGDSGNIKCRVGSSAVRKLFTEDYTPVGDLGDLHTSHDISDLDPHQLTACDGDGDQLAGLSYVDSQEPGELTQDNALDFVENFLKDNPIEFDLDGGMHKLDAMVQPKLVPNPRGQYNLANIVNCIRTVGESRVFDWDDNREDEGGGDIFCRKKEEFFTEPRKSKGRRLDRNGDKEASLSIQNMKSRLFCSDSRLELRKGKENNESSREASVKCKKNISYKLNQENDGDACRGELEDNDVQPDQQEVSNVGFDTQMAAEAMEALFNDENVHKLVHNEENQHLENIPMDSFRGSRSRKPDSSSKSRRSSRGHASSSEVAPRQSKERNQKFSGDLMKVCRNETLKLSERSKKRDADAMKGNENNGRDSNDGCNMTKKQLLRGKVVEVSPVARRTRQSMIANQSKKDQIASDGCEQSILRGKVVEVSPVARRTRQSMIANQSKKDKIASDGCEQSISKVGSLIKKSSGDRAIRDSEAKRTKSLEVASKTLKTKSKGTENYAKNSIGERGLCDMLAGQVSLPDDLLGQTIDRRKRSCNMKKTRSSICVLSPPLNMNLERRTVGRTSAEKAHGGTITADMNGQLSIENSNRPNFVQQLNKKNDGCSVSSIVKTVSDESPSKRHKPSITVCTTPPDNCMTPINTASPVCIGSEYYKQSCKKNLSKSSLLKELRDLTAPGLVSRSFPTESRKRKDMNDVRVLYSQHLDEDIIKQQKKTLTRLGVTVVSSMTEATHFIADKFVRTRNMLEAIALGKLVVTHQWIESCGQARCFIDEKNHILRDTKKEKEFGFSMPGSLACARERPLLEGRRVLITPNTKPGKAIISSLVKAVKGQAVERIGRSTLKDDQIPDDLLVLSCEEDYDECIPFLEKGAAVYSSELLLNGIVTQKLEFERHCLFVDHVKRTRSTIWLKKDGNKFHPVTKHQ 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 56770182 56777505 + XM_039019705.1 Bhi12g01748 53560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01748 1173 CDD BRCT_PAXIP1_rpt6_like 1053 1139 - -
Bhi12g01748 1173 SMART BRCT_7 941 1018 IPR001357 -
Bhi12g01748 1173 Gene3D BRCT domain 1050 1152 IPR036420 -
Bhi12g01748 1173 ProSiteProfiles BRCT domain profile. 939 1028 IPR001357 -
Bhi12g01748 1173 MobiDBLite consensus disorder prediction 480 500 - -
Bhi12g01748 1173 CDD BRCT_MDC1_rpt1 947 1021 - -
Bhi12g01748 1173 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 51 1143 - -
Bhi12g01748 1173 MobiDBLite consensus disorder prediction 594 616 - -
Bhi12g01748 1173 Gene3D BRCT domain 936 1049 IPR036420 -
Bhi12g01748 1173 MobiDBLite consensus disorder prediction 532 565 - -
Bhi12g01748 1173 SUPERFAMILY BRCT domain 935 1044 IPR036420 -
Bhi12g01748 1173 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 937 1027 IPR001357 -
Bhi12g01748 1173 MobiDBLite consensus disorder prediction 532 627 - -
Bhi12g01748 1173 PANTHER MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1 51 1143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01748 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1751.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02434 Bhi-Chr3:56310214 Bhi12g01748 Bhi-Chr12:56770182 5.68E-15 dispersed
Bhi03g02435 Bhi-Chr3:56310214 Bhi12g01748 Bhi-Chr12:56770182 5.17E-15 dispersed
Bhi09g00971 Bhi-Chr9:22132806 Bhi12g01748 Bhi-Chr12:56770182 5.02E-14 dispersed
Bhi09g00972 Bhi-Chr9:22132806 Bhi12g01748 Bhi-Chr12:56770182 3.74E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32