Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01780 TACCTCTCCAACGAAACCGCCGACTCCCACCGATTCTCCATCCCCGTCATTTATGGATACTTCTCTCTGATGCCATCAAATTCCGCTCTCAAATTCCGCTCTCAAATTTCACCGGCGAAGAGATTGGAAGTTCTTCAAACAAAATGCGAGGCCATGATTGGATCAATACGGTCCTTCCTGATGAGTTGATCGTTGAGATCTTTCGGTGCCTTGATTCGAAGCTCAGTCGCGATGCTTGTTCTCTCGTTTGCAGGCGTTGGCTCAAGCTCGAGCGCCACAGCCGGACCACCCTACGAATCGGTGCAACTGGTAGCCCCGACCTCTTTGTTCAGCTCCTTGCTCGCCGTTTTGTCAATGTCAGAAATGTCCACATTGACGAGCGCCTGGCGATTTCTTTTTCCCTTCATCCAGGAAGAAGACGTCGCAAGGAAACCATGCGCTTGCCATACCTTGCAACTGATAGTACTGGGGCTGAAGGTGCGTTGGAATCTTGTCTGTCAGATGCTGGGTTAATTGCTCTCTCCGTAGGTTTTCCGAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAACGTTTCAAGTCACGGTTTGACATCCCTAGCTGAGAAGTGTAGATTTTTGAAATCACTGGATCTACAGGGCTGCTATGTTGGGGACCAAGGTATAGCTGCAGTTGGGAAATTCTGTAAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGCATTAGCCTTTGGTTGTGGAAAATCATTGAAAGCATTTGGTATTGCAGCTTGTGCCAAAATAACTGACGTCTCATTAGAAGCTTTGGGTGTGCACTGCAAATATCTTGAGGTCTTGTCGCTAGATTCAGAAGTTATCCACAACAAAGGGGTGCTTTCCGTAGCTCAAGGCTGCCCACATCTGAAAGTTTTGAAGCTACAATGTACAAATGTCACAGACGAAGCCTTGGTAGCTGTAGGCGCCTCATGTCCTTCTCTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACCGACAAGGGTTTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATGGGTTTGGAGGCTGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTGAACGGCTGCCACAACATTGGAACCATGGGACTTGAATCCATCGCAAAATCTTGCCTCCAACTCACTGAATTGGCTTTGTTGTACTGCCAAAAGATTGTCAACTCTGGTCTTCTTGGAGTTGGTCAAAGTTGCAAGTTCTTACAAGCGCTTCACTTGGTAGATTGCTCAAAGATTGGAGATGAAGCAATATGTGGCATAGCCGAAGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGATTGGGAATGCAGGAATCATAGCTATTGGCGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGATAGGGTTGGTGATGAGGCGCTTATTGCCATTGGTAAGGGTTGTTCCCTTCATCAGCTGAATGTTAGCGGGTGCCACCGTATTGGTGATGAGGGAATTGCAGCCATCGCTAGAGGTTGTCCCCAACTGAGTTACTTGGATGTAAGCGTTCTCGAGAACTTGGGTGATGTGGCAATGGCTGAGTTAGGGGAAGGCTGCCCCTTGCTCAAGGACGTGGTGTTGTCTCACTGTCACCAGATAACCGATGCGGGTATAATGCATTTAGTGAAGTGGTGCACCATGCTGGAATCCTGTCACATGGTCTACTGTCCCGGTATTTCCGCAGCTGGGGTCGCCACTGTTGTTTCTAGCTGCCCCAACATAAAGAAAATTCTGGTTGAGAAATGGAAGGTGAGTGAGAGAACGAAACGACGTGCTGGTTCAGTTATTTCATACCTTTGCGTGGACCTCTAGAACACATTTTCGTGTTCGTGCTCATGCTCGTGTTGGTGATAGTTGAGTCAAGTAAGTCTATCTGAATTTGTTTTGCTGTCACTTTTCAGTTGCCCTTCGTGGTTTTTTTCTTGTGCTGCATCTCTTGTTGTAATTCTTAAATTCAGAAGATGACGACCATGGTTTTGTCAAAAGAGAAATATTGGCTGAGCTCAATTAACATCGTTGATAGTAATAATATTGTATAGAAAGCCCAATAAAGCGACAATTCTGAATTTAAGAAAAATCCGCCGGAATCCCCCGTTGGTATGATGTGAACCCAATTGAGGCGGGGAGGATGTATTTCTTATTGAAAGAGTCATTCGATCATTGAGTTTTCAATATGTTATTGCTTGATGAAATGTATTCGTGTAATCAAACTAAAGTCTTTAACTAGTTCTTTTTTCCCTCTTA 2381 44.65 MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERHSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPGRRRRKETMRLPYLATDSTGAEGALESCLSDAGLIALSVGFPNLEKLSLIWCSNVSSHGLTSLAEKCRFLKSLDLQGCYVGDQGIAAVGKFCKQLEDVNLRFCEGLTDTGLVALAFGCGKSLKAFGIAACAKITDVSLEALGVHCKYLEVLSLDSEVIHNKGVLSVAQGCPHLKVLKLQCTNVTDEALVAVGASCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDMGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIAKSCLQLTELALLYCQKIVNSGLLGVGQSCKFLQALHLVDCSKIGDEAICGIAEGCRNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDVAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMLESCHMVYCPGISAAGVATVVSSCPNIKKILVEKWKVSERTKRRAGSVISYLCVDL 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 57182398 57188572 - XM_039018728.1 Bhi12g01780 53592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01780 601 Gene3D Ribonuclease Inhibitor 115 169 IPR032675 -
Bhi12g01780 601 Gene3D Ribonuclease Inhibitor 170 349 IPR032675 -
Bhi12g01780 601 Pfam Leucine Rich repeat 259 279 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 440 462 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 414 436 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 184 204 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 155 176 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 466 488 IPR001611 GO:0005515
Bhi12g01780 601 Pfam Leucine Rich repeat 517 539 IPR001611 GO:0005515
Bhi12g01780 601 SUPERFAMILY RNI-like 233 575 - -
Bhi12g01780 601 Pfam F-box 11 48 IPR041567 -
Bhi12g01780 601 Gene3D Ribonuclease Inhibitor 350 601 IPR032675 -
Bhi12g01780 601 SUPERFAMILY RNI-like 119 257 - -
Bhi12g01780 601 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 471 576 - -
Bhi12g01780 601 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 492 - -
Bhi12g01780 601 Gene3D - 7 47 - -
Bhi12g01780 601 PANTHER UNCHARACTERIZED 471 576 - -
Bhi12g01780 601 PANTHER UNCHARACTERIZED 12 492 - -
Bhi12g01780 601 SMART fbox_2 11 52 IPR001810 GO:0005515
Bhi12g01780 601 SMART LRR_CC_2 466 490 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 517 542 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 156 180 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 181 206 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 543 568 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 491 516 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 130 155 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 440 465 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 284 309 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 336 361 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 414 439 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 234 258 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 310 335 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 388 413 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 208 233 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 362 387 IPR006553 -
Bhi12g01780 601 SMART LRR_CC_2 259 283 IPR006553 -
Bhi12g01780 601 SUPERFAMILY F-box domain 9 45 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01780 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1147.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02590 Bhi-Chr1:63937298 Bhi12g01780 Bhi-Chr12:57182398 2.22E-13 dispersed
Bhi01g02591 Bhi-Chr1:63941626 Bhi12g01780 Bhi-Chr12:57182398 3.02E-13 dispersed
Bhi02g01815 Bhi-Chr2:49571657 Bhi12g01780 Bhi-Chr12:57182398 1.43E-13 dispersed
Bhi04g00953 Bhi-Chr4:24113279 Bhi12g01780 Bhi-Chr12:57182398 5.13E-24 dispersed
Bhi05g01898 Bhi-Chr5:59366289 Bhi12g01780 Bhi-Chr12:57182398 1.34E-16 dispersed
Bhi07g01097 Bhi-Chr7:34697485 Bhi12g01780 Bhi-Chr12:57182398 9.95E-11 dispersed
Bhi09g00509 Bhi-Chr9:10805806 Bhi12g01780 Bhi-Chr12:57182398 2.69E-16 dispersed
Bhi09g00510 Bhi-Chr9:10805806 Bhi12g01780 Bhi-Chr12:57182398 1.50E-16 dispersed
Bhi09g00512 Bhi-Chr9:10849149 Bhi12g01780 Bhi-Chr12:57182398 2.18E-23 dispersed
Bhi09g02480 Bhi-Chr9:67200681 Bhi12g01780 Bhi-Chr12:57182398 5.06E-20 dispersed
Bhi09g02481 Bhi-Chr9:67282530 Bhi12g01780 Bhi-Chr12:57182398 3.82E-20 dispersed
Bhi10g01506 Bhi-Chr10:36770339 Bhi12g01780 Bhi-Chr12:57182398 1.35E-13 dispersed
Bhi11g01597 Bhi-Chr11:46051928 Bhi12g01780 Bhi-Chr12:57182398 1.09E-08 dispersed
Bhi11g01760 Bhi-Chr11:49882634 Bhi12g01780 Bhi-Chr12:57182398 7.80E-08 dispersed
Bhi11g01761 Bhi-Chr11:49882634 Bhi12g01780 Bhi-Chr12:57182398 7.80E-08 dispersed
Bhi12g01780 Bhi-Chr12:57182398 Bhi09g02242 Bhi-Chr9:63081042 1.06E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32