Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01792 ACAATCTCTTGACTCGATTTCAACCGACTGCTAGATGGGGATTTAAACCCAACATTTTGAGTAATATTTAGATGATTTCGTCTCATGCTCGTTTCTTCGATACCCAAATTCTTCTTCCCTCGACGTATTACGATTCCTCTTTATCCCAAATGGGTCTCCGCCTTCTCCACAATCGGATCTTCTCCACGCCCTCTCCGGAATCTTTCCTCATTCCTCAATGGCAGACCTTCAAGCAACTGCCTGGATTACGAGCTATCCTTGGTCTCAACCTTGAAGTACTGCGCATCCAGTTCAGCCATTTTTCCAGGGCAACAAATCCATGTAATCGTCCTCAAATCTGGGTTTAACTCCAATACTTTCATCCTTAATAGCTTGATTAATATGTATGTCAAATGTGGACTTCTTTCCGATGCTAGATTGCTGTTTGATTCGTGTTCTGTCTTGGATTCTGTATCTTGTAACATTATGATATCTGGGTATGTAAAACTTCGCCAATTGGAGAATGCACGCCAGTTGTTCGATAAAATGCCTGAAAGAGGCTGCGTCTCTTACACCACCATGATTTTGGGTTTGGCACAGAATGATTGTTGGAGGGAAGCAATTGAGGTTTTTAAGGATATGAGGTCTGCAGGTGTGGCCCCAAATGAAGTGACAATGGCAAGTGTTATGTCAGCATGTTCACATATTGGTGATATGTGGAACTGCCGGATGCTCCATGCATTGGTAATAAAGTTACATTTCTTTGATCTTGTTCTTATTTCGACAAATTTGTTGCACATGTATTGTGTTCGTTCAAGTTTAAAGGATGCTAGGAGATTATTCAGTGAGATGCCGGTGCGTAATACTGTTTCATGGAATGTGATGTTAAAAGGGTATGTGAAATCAGGTCTTCTTGATCAAGCAAGAGAGTTGTTTGACAGGATTCCAGAAAGAGATGTGATTTCTTGGGCTACAATGATTGATGGGTTTGTGCAAGGGAAACAGTTAAGGGAAGCTTTGTTGATGTATTCTTCAATGAGAAAGAGTGATATGCATCCCAATGAAGTGATGATTGTTGATTTGCTTTCTGCTTGTGGGCAGTCAGTTTCAATTGATGAGGGCAGGCAGTTCCATTCTCTGATGGTAAAAAATGGTTTTGTTTGTTATGATTTCATACAAGCAACTATTATTAGTTTCTATGCAGCTTGTGGAAGGATTGATCTTGCTTATTTGCAATATCAGATGAGTGATAAGAGTCATCTCGCATCTTCAAATGCCCTTATTGTGGGCTTCACAAAGAACAGAATGATTGATCAAGCAAGGCAAATATTTGATATGATGCCTAAAAAAGATGTTTTTTCATGGAGCACCATGATTTCTGGTTATGCACAGAATGAGTTGCCTGATGTGGCTTTAGAGCTTTTCCATAGAATGGTTGTTAGTGAAGTCGAGCCTAACGAGATCACCATGTCTAGCGTTTTCTCTGCTATTGCAGCTTTAGGTCAACTACAAGAAGGAAGATGGGCCCATGAGTATGTTTGCAACAAAGCCATTCCTCTTAACGATAATTTGAGTGCTGCTATCATTGACATGTATGCCAAATGTGGAAGTATCAACACTGCTTTGGATGTGTTCCATCAGATCAGAGACAAGGCCTCCACAGTCTCACCATGGAACGCCATCATATGTGGATTGGCAATGCACGGGCATGCAAATTTATCTATCAAAATATTTTCCAACTTGCAAAGAATGAGTATCAAGCTCAACTCAATCACATTTCTTGGGGTTCTCGGTGCTTGTTGCCATGCTGGATTAGTCGAGCTCGGGGAGAGATGCTTCTGGAGCATGAAGACAGTACATGGCATAGAACCAAACATTAAGCATTATGGATGTCTGGTAGATCTGTTAGGCAGGGTCGGGCGGTTAAGGGAAGCGGAGGAAATTATAAGAACCATGCCAATGAAGGCAGATGTTGTGATATGGGGTACATTATTGGCAGCATGTAGAACACATGGGGAAGTCGAAATAGGCGAAAGAGCTGCAGAGAGTTTGGCTAGATTGGAACCATCTCACGGGCCAGGTCGAGTCCTCCTGTCCAACTTATATGCTGATGCAGGGTTATGGGAGGATGCAGCCTTGGTTAGAAAAGCAATGCAAAGTCAAAAGGTGATAAGATCACCTGGGTGCAGTGGTATTGTATGAAGAATTATAAGCAAGGAAAAAACCATATGAAAACTTTTGTCAACTAACCCTTTTAAGTTGTATTGCATTTGTCTTTAACACTGAATGTAACTGACTATTTTTTTCTGATAATTTTCAGCTTTTATCAA 2309 41.06 MLVSSIPKFFFPRRITIPLYPKWVSAFSTIGSSPRPLRNLSSFLNGRPSSNCLDYELSLVSTLKYCASSSAIFPGQQIHVIVLKSGFNSNTFILNSLINMYVKCGLLSDARLLFDSCSVLDSVSCNIMISGYVKLRQLENARQLFDKMPERGCVSYTTMILGLAQNDCWREAIEVFKDMRSAGVAPNEVTMASVMSACSHIGDMWNCRMLHALVIKLHFFDLVLISTNLLHMYCVRSSLKDARRLFSEMPVRNTVSWNVMLKGYVKSGLLDQARELFDRIPERDVISWATMIDGFVQGKQLREALLMYSSMRKSDMHPNEVMIVDLLSACGQSVSIDEGRQFHSLMVKNGFVCYDFIQATIISFYAACGRIDLAYLQYQMSDKSHLASSNALIVGFTKNRMIDQARQIFDMMPKKDVFSWSTMISGYAQNELPDVALELFHRMVVSEVEPNEITMSSVFSAIAALGQLQEGRWAHEYVCNKAIPLNDNLSAAIIDMYAKCGSINTALDVFHQIRDKASTVSPWNAIICGLAMHGHANLSIKIFSNLQRMSIKLNSITFLGVLGACCHAGLVELGERCFWSMKTVHGIEPNIKHYGCLVDLLGRVGRLREAEEIIRTMPMKADVVIWGTLLAACRTHGEVEIGERAAESLARLEPSHGPGRVLLSNLYADAGLWEDAALVRKAMQSQKVIRSPGCSGIV 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 57427659 57429967 - XM_039020341.1 Bhi12g01792 53604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01792 698 Pfam Pentatricopeptide repeat domain 541 602 IPR002885 -
Bhi12g01792 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 134 - -
Bhi12g01792 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 269 697 - -
Bhi12g01792 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 132 202 - -
Bhi12g01792 698 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 204 400 - -
Bhi12g01792 698 Pfam PPR repeat 492 515 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat 255 284 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat 94 115 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat 227 252 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat 286 315 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat 123 153 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat family 154 199 IPR002885 -
Bhi12g01792 698 Pfam PPR repeat family 415 462 IPR002885 -
Bhi12g01792 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Bhi12g01792 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Bhi12g01792 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 186 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 154 188 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 286 320 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 390 417 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 255 285 IPR002885 -
Bhi12g01792 698 TIGRFAM PPR: pentatricopeptide repeat domain 123 154 IPR002885 -
Bhi12g01792 698 Pfam E motif 636 697 IPR046848 -
Bhi12g01792 698 Gene3D Tetratricopeptide repeat domain 221 333 IPR011990 GO:0005515
Bhi12g01792 698 Gene3D Tetratricopeptide repeat domain 335 492 IPR011990 GO:0005515
Bhi12g01792 698 Gene3D Tetratricopeptide repeat domain 58 220 IPR011990 GO:0005515
Bhi12g01792 698 Gene3D Tetratricopeptide repeat domain 493 695 IPR011990 GO:0005515
Bhi12g01792 698 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01792 - - - csv:105435822 1222.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01792 Bhi-Chr12:57427659 Bhi01g01789 Bhi-Chr1:38146354 8.60E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g422 . . . . Bpe04g01189 . . . . Cmo17g00263 . . . . . . . . . . . . . . Cla06g00540 . . . . . . . Cone15ag0813 . . . . Chy11g01436 . . . . . . . . . . . . . Cma17g00276 . Car17g00251 Cpe12g00229 . Bhi12g01792 . . . . . . . . . . . . . Lsi09g01362 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012333 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 27