Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01822 CTGAGGCTCCTGGCAAAGTCGCACGCACAAGAAAATACAGAAGAAGGAAGAAAGAAACGAAGGCCAAAAAGAAATTTTGCAATTTACGCGCGACACCAGATTTTTTTTTTAAAAAAAATTTTAATTCGTTTTCAATTTTAATTCTTCAAAATTAGCCGTCAAATATAAATAAAAATAACCCCTTCTTCTTCTTCCTCTTATTCTTCTTCTTCCTCTCCCGCCATGAATATGGCTCATCTCGACACCGACCTCCCTTCCCTCGACCACCTTCACTCTACCAGGTCCCTCATCTCCGCTCTCAATTTACTCTCCCGGAATCTTCCTCTTCCTCCCGACCTCTTTGAAGCTGTTTCTTCCATTTATTCCGCTCCTCAACACCAGGATCTTACTCCTCTCAATGATTCGGAGGAGGTTGGAGATTCTGTTCAAGAAGATTTATTGACTGACCTTGGAGATGCTTTGGTGAAGCAACGTTCGAATTTTGTATCTGGTTCGGGGTTGGAACAGTTGAGAGAAGAGCGGTATCGAGGTCGCGTGCGACATCGGTTGAATGATTTAGAAGAATTACCTTCAAGTAGAGGGGAAGACTTACAGACAAAGTGCTTGCTTGAACTGTGCGGATTAAAGTTACTAGATTTGCAAAAAAAGGTACGATCTGATGTGAGTTCAGAGTACTGGCTTCAAGCAACTTGTGCATATCCAGACAAACAATTATTTGATTGGGGCATGATGCGTTTGCACCGTCCACCATATGGTGTAGGCGATGCTTTTGCCGTGGAAGCTGATGATCAATTGCGGAAGAAACGGGATGCTGAGAGGACATCAAGGTTAGAAGAGGAGGAGAAGAACCAAATTGAGACTAGGAAAAGAAAATTTTTTGCTGAGATACTGAATGCTGTACGTGAATTCCATTTACAAATTCAAGCTTCTATAAAACGTCGGAAACAGAGAAATGACGGAGTTCAGGCATGGCATGGAAGACAAAGACAACGTGCTACAAGGGCAGAAAAACTGAGGTTCCAAGCACTAAAGGCAGATGATCAAGAAGCTTACATGAGATTGGTTAAGGAGAGCAAGAACGAACGATTAACAACACTTCTTGAAGAAACAAACAAACTACTTGTTAACTTGGGTGCTGCCGTTCAAAGACAGAAAGATTCTAAACTCTCTGATGGCATTGAGACCTTGGATGAATCTGATGTTGATTTAACCGAGTTGGATTCTTCAAAGAATGCAACTCCTCAAGATCTACTCATGGACGAAGATCTAGATGCCATTGATTCTGACCGAAATGATGAAACTGGTGATTTGCTTGAAGGACAGCGACAATATAACTCTGCCATTCATTCAATTCAAGAAAAGGTCACTGAGCAGCCTTCCATGCTACAAGGAGGGGAATTGAGGCCCTACCAAATAGAAGGACTTCAGTGGATGCTTTCATTATTCAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGGCTGGGGAAAACAATACAAACAATCTCATTGATTGCTTACCTCATGGAATACAAGGATGTGACTGGACCTCATTTAATAGTTGCTCCCAAGGCTGTACTGCCAAACTGGATTCATGAATTCACAACATGGGCCCCAAGTATCGCTGCTGTTCTTTATGATGGACGTCAGGAGGAGAGAAAAGCTATAAAGGAGGAGCTATTGAGTGAAGGAAAATTTTGTGTCTTGATTACACATTATGATCTCATTATGAGAGATAAATCATTTTTGAAGAAAATACACTGGTATTATATGATTGTTGATGAAGGCCATCGGCTGAAGAATCGTGATTGTGCTCTTGCACAGACACTTGCAGGCTACCAGATCAAACGTAGACTTCTCTTGACTGGTACACCCATCCAGAACAGTTTGCAGGAACTATGGTCCCTACTTAATTTTCTCCTGCCGCATATATTTAATTCTGTCCAGAACTTCCAGGAGTGGTTTAATGCACCATTTGCAGATCGGAGTGATGTTACTCTGACAGATGAAGAAGAGCTATTGATCATTCGCCGTCTGCATCATGTTATTAGGCCATTCATATTGAGGAGGAAAAAGGATGAGGTGGAAAAGTATCTACCTGAAAAGTCACAAGTCATACTAAAATGTGATATGTCAGCATGGCAGAAAGTATACTATCAACAAGTCACTTCTATTGGCAGAGTTGACACTGGTTCTGGCAAATCAAAGTCCCTACAAAATTTAACGATGCAGCTGAGGAAGTGTTGTAATCATCCATATCTTTTTATTTTGGGAGATTATAATATTTGGCGCAAGGAGGAGATCGTCAGAGCTTCTGGGAAATTTGAACTACTGGATCGTTTACTCCCAAAGCTACATAGAGCTGGACATAGAGTCTTGCTTTTCTCACAAATGACTCGTCTTATGGACATTCTTGAAATTTATCTTCAGCTCCATGAGTTTAGATATCTGCGACTCGATGGTTCAACGAAAACTGAAGAAAGAGGGGCTTTAGTGAAGCAATTTAATGCTCCAGACTCCCCATTCTTCATGTTTCTCTTGAGTACTCGGGCTGGTGGTTTGGGTTTGAACTTGCAAACTGCGGACACTGTTATTATCTTTGACAGTGATTGGAATCCTCAAATGGACCAGCAGGCAGAGGATCGAGCTCACCGTATTGGACAAAAGAAGGAAGTAAGGGTGTTTGTCCTGGTTAGTGTTGGATCTGTTGAAGAGGTTATCCTGGAGCGTGCAAAACAGAAGATGGGGATTGATGCCAAGGTTATCCAGGCTGGACTTTTCAACACAACTTCAACAGCTCAAGACCGGAGAGAGATGTTAGAGGAGATTATGCGCAGAGGAACTAGTGCACTGGGCACCGACGTGCCAAGTGAGAGAGAAATCAATCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAGAAGGAGAAATATAGATCTCGCTTGATGGAAGAACACGAGGTACCTGAGTGGGTATACTCAGTACCCGAAGGTAATGAAGAGAAGAACAAGGGTTCAGATATTTTCGGCGTCGCTGGAAAACGAAAAAGAAAGGAGGTGATTTATGCTGACACACTGAGTGATTTGCAGTGGATGAAGGCTGTGGAAAATGGAGAAATTCCAAGCCTTTCAATGAAAGGGAATAGAAGAGAGACTCCCTCACGTGAAGGCAGTGCATCAACCAGCAATATTACCGGCACAAGGGCAGAGGATAAGCTGATAGAATTTGATGATAACGTTCCTGTAATGAGTGAGGGAACAAGTGAAGACAATTCTGGTTTAGAAGCAACCCCAAATAGACAAAAGTGTGAAGGAGCAAGTATTAGAAAACATGAATTCCTGGCCGAGTCGGGAAGTGAATGGAGTCGATGTGTAATAACATGGAAAACACACAAGAAGAAGCGGTCGAGCTATGTCCAAGGTTCTTCAGATTCTAGACATAACTCCAATGGAAGAGGAAACGGATGGGCTTGATTAGAGATTCAAAACATTGAGCAATCCCGTAAATGGCAAAATAATGCCATTAACTTCAGCTTCGCTTCCGAGTTCTGTTCAGCAACTGATACTCCATAGATGAACTTCAGCTTCACACATTTATCAGCTGATTGAAGGACGAGAAATGAATGAGAATGTTCTCATTTTAAAGTGCAATGGCAAGTTCTCAAGAGCTCTTCCTCATCCATTCAATGTTTGTAAAATTTCTCATGTTTGCTATGATATAGCAATGTAGGTGTAGACATTTATATACATACTTCTCCCTGTCCACTGCTCTCTAATTTAATATAAAGCCTCTTCAATTAAATGCAGGCTTTGACCTGAAAATCCTTAGAAAACATTTCCCATTTTTCACACCAATTACCTTTTA 3898 41.48 MNMAHLDTDLPSLDHLHSTRSLISALNLLSRNLPLPPDLFEAVSSIYSAPQHQDLTPLNDSEEVGDSVQEDLLTDLGDALVKQRSNFVSGSGLEQLREERYRGRVRHRLNDLEELPSSRGEDLQTKCLLELCGLKLLDLQKKVRSDVSSEYWLQATCAYPDKQLFDWGMMRLHRPPYGVGDAFAVEADDQLRKKRDAERTSRLEEEEKNQIETRKRKFFAEILNAVREFHLQIQASIKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRLVKESKNERLTTLLEETNKLLVNLGAAVQRQKDSKLSDGIETLDESDVDLTELDSSKNATPQDLLMDEDLDAIDSDRNDETGDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEYKDVTGPHLIVAPKAVLPNWIHEFTTWAPSIAAVLYDGRQEERKAIKEELLSEGKFCVLITHYDLIMRDKSFLKKIHWYYMIVDEGHRLKNRDCALAQTLAGYQIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFQEWFNAPFADRSDVTLTDEEELLIIRRLHHVIRPFILRRKKDEVEKYLPEKSQVILKCDMSAWQKVYYQQVTSIGRVDTGSGKSKSLQNLTMQLRKCCNHPYLFILGDYNIWRKEEIVRASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDILEIYLQLHEFRYLRLDGSTKTEERGALVKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSALGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKEKYRSRLMEEHEVPEWVYSVPEGNEEKNKGSDIFGVAGKRKRKEVIYADTLSDLQWMKAVENGEIPSLSMKGNRRETPSREGSASTSNITGTRAEDKLIEFDDNVPVMSEGTSEDNSGLEATPNRQKCEGASIRKHEFLAESGSEWSRCVITWKTHKKKRSSYVQGSSDSRHNSNGRGNGWA 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 58140417 58147677 + XM_039018734.1 Bhi12g01822 53634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01822 1094 CDD SF2_C_SNF 692 825 - -
Bhi12g01822 1094 Gene3D - 623 921 IPR027417 -
Bhi12g01822 1094 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 570 IPR014001 -
Bhi12g01822 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 617 IPR027417 -
Bhi12g01822 1094 SMART SnAC_2 907 969 IPR029295 GO:0042393
Bhi12g01822 1094 SMART helicmild6 730 814 IPR001650 -
Bhi12g01822 1094 Pfam Helicase conserved C-terminal domain 701 814 IPR001650 -
Bhi12g01822 1094 Pfam Snf2-ATP coupling, chromatin remodelling complex 908 969 IPR029295 GO:0042393
Bhi12g01822 1094 MobiDBLite consensus disorder prediction 1078 1094 - -
Bhi12g01822 1094 MobiDBLite consensus disorder prediction 991 1005 - -
Bhi12g01822 1094 Coils Coil 187 214 - -
Bhi12g01822 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 868 IPR027417 -
Bhi12g01822 1094 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 871 IPR001650 -
Bhi12g01822 1094 PANTHER SNF2/RAD54 HELICASE FAMILY 15 1040 - -
Bhi12g01822 1094 PANTHER ATP-DEPENDENT HELICASE BRM 15 1040 - -
Bhi12g01822 1094 MobiDBLite consensus disorder prediction 979 1039 - -
Bhi12g01822 1094 MobiDBLite consensus disorder prediction 1021 1035 - -
Bhi12g01822 1094 SMART ultradead3 389 581 IPR014001 -
Bhi12g01822 1094 Gene3D - 363 616 IPR038718 -
Bhi12g01822 1094 Coils Coil 905 925 - -
Bhi12g01822 1094 Pfam SNF2-related domain 396 681 IPR000330 GO:0005524|GO:0140658
Bhi12g01822 1094 MobiDBLite consensus disorder prediction 1068 1094 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01822 - - - csv:101222943 2074.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00925 Bhi-Chr1:17263790 Bhi12g01822 Bhi-Chr12:58140417 0 dispersed
Bhi01g01953 Bhi-Chr1:43666278 Bhi12g01822 Bhi-Chr12:58140417 6.02E-73 dispersed
Bhi12g01822 Bhi-Chr12:58140417 Bhi12g02092 Bhi-Chr12:64701954 8.77E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007862 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2698 PF00176 SNF2_N 5.50E-69 CL0023 Bhi TR