Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01841 AGATTTTGTTTGCTTTCTCAAATCTCTCTTCCTTCCCTTCGTAAAGCAAAATCAGCCCATTATCCACCACTCGTCTGTTAATCACAAACACACAGAAGAGAGAGAAAACAAAACAAAGAAAAAACAGAGTAAAAAGGAGCTTCTTCTTACCCTAGAAATATGTATTCTGATAAAGACTTGTGCTCAGTGATTCCGTATTGAATTATTACCTTCTGGGTTTTTGTAGTAATTGCTCTTCTTCAATGGTAGTAGTAGTTGCTGTTGTTCTTCCTCTTAGAACCTGAAGCCTATTTTTCTTGAGATTTCAAGTTAAGTACCATAAGAAACTAGATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCGTTCTATATGCAGAGAGGAATTAGCAACTCTGGCTCTGGTGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAAACCAACACTGGAGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTAGGGGCTCAATCTGGTGGAGTGGTTGCCAGTGAGCCGGTGAAACGCAAGCGAGGCCGACCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCTCCTTCTGCTGTCAATCCAGCCACTGTAGCTTCTTCCCCGAAGCGGGGAAGGGGACGGCCTCCCGGGTCTGGAAAGAAGCAACAATTGGCTTCTCTTTGTGAAACACTTTCTGGATCAGCTGGCATGGGCTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCCGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCAGGAGGCACGGTCACATATGAGGGTCGTTTTGAGATAATATGTCTGTCAGGCTCATATGCCCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTTTCCCTTGCTAGCCCTGATGGGCGTGTTATCGGTGGTGGAGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATTGACTCAGATCATCAGTCAGTAGATCATGCAGTAGCAATTGCGAACGTGCAGCAGAATCAGAATCTGACTCCGACGTCGTCGGTTAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCGCACATTGACATTGATCTGATGCGCGGTTGAGAGCAGTTTAGTTGGTAATTGTCCCACATGTCTTGAGTACTTGTGAAGTCTGTTAGGTTAATTTAAGTGAGATTGAGTTTGGATTTATGTTGCTGTGGTTAGATCCTGATTATTGACATTCTAATTTGTAGTTTATGCTTTTTTTTTTGGTAACCAATGAACATGAATCCAAGTCTGGCTTTCTGAAAA 1524 45.67 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 59109327 59114609 - XM_039018776.1 Bhi12g01841 53653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01841 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Bhi12g01841 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Bhi12g01841 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Bhi12g01841 334 MobiDBLite consensus disorder prediction 11 52 - -
Bhi12g01841 334 MobiDBLite consensus disorder prediction 98 114 - -
Bhi12g01841 334 Gene3D - 151 283 - -
Bhi12g01841 334 CDD DUF296 150 264 IPR005175 -
Bhi12g01841 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Bhi12g01841 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Bhi12g01841 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Bhi12g01841 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Bhi12g01841 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 IPR039605 GO:0003680
Bhi12g01841 334 MobiDBLite consensus disorder prediction 1 134 - -
Bhi12g01841 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00097 Bhi-Chr10:2180845 Bhi12g01841 Bhi-Chr12:59109327 6.45E-35 dispersed
Bhi11g00147 Bhi-Chr11:3375138 Bhi12g01841 Bhi-Chr12:59109327 1.31E-55 dispersed
Bhi12g00246 Bhi-Chr12:7653795 Bhi12g01841 Bhi-Chr12:59109327 3.44E-88 dispersed
Bhi12g00573 Bhi-Chr12:18064211 Bhi12g01841 Bhi-Chr12:59109327 7.29E-58 dispersed
Bhi12g01841 Bhi-Chr12:59109327 Bhi12g01842 Bhi-Chr12:59109327 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01841 - - csv:101203138 620.542