Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01876 TAAGAGAATGAATATAAAAAAGTAATTGGGAATAAAAAATCAATGAATGGGAAGCGAAAAAAAGAAAAAAAAGAAAAAAGTTTAATCCATTTGACGAAGCTATGGTCTATGGATCCTAAAGAAAGCAAAAAAGTGCGGAAGACCAGAAACAAACAGAAGCCAAAAAAGGGAGCACAATGAATTGGCATAACCCGAAAATAAATTTCAATCCACATATCCATTTGCAACCAAATTGACGAACGAACCAAAAAAGGGAAAGAAAGGTAGTTTAAAAGGGGGAAAGTGGGGTCCCATAATCCCACACAGCGACAACCCATTTCACCATGGCTTCTCTTCACAGAAAGCAAGCTATTCATGCCTGCTTTCTCTTCCTCTTCCTTTTCTTCTCTCTGCCATCTCTCTCCGTCTCTGTCACTGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTCTTGGCTCTCAAAGAACACGATCAACTCCCAGATGACTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAGAGGTTGGAGAAGGCTTATGTAGCCCTTCAGGCTTGGAAATTGGCCATCTATTCCGACCCCCAGAACATTACCGCCAATTGGGTTGGCGCCGATGTCTGTTCTTACAACGGCGTCTTCTGTGCTCCGGCGCTCGATGACCCAAATATCGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCGCCGGAAATTGGCCTTATGACCGATTTGGCTCTCTTCCATATCAACTCCAACAGGTTCTGTGGAATCATTCCTTCCAGCTTCTCCAAGCTCGTTCTCATGTTTGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCTTGTCGTCCTTGAATGGCCCAGTGCTAAGTTCCTTGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATCTTCTTAAACAACAACAGATTCACCTCCTTGATCCCCGAAACCATCGGAAACTCCACCGTCTCCGTTGTCTCCTTCGCCAACAACGAATTCCACGGCTGCATTCCCAACACCATTGGCCACATGTCCAACCTCAACCAGATCCTCTTCATCGGCAACAAGCTCGGCGGCTGTTTCCCACCTGAGATCGGAAAACTCATCAATCTCACTGTATTCGATGCCAGCGCCAATGGCTTCATCGGACACTTGCCTGAATCCTTATCGAGCCTTCAAAACTTGGAGATTATCGACGTTAGTAACAATGAACTGAGGGGCTCTGTTTCTGGAGGCCTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGAGAAGATGCGGCGTGTGTTGAATCTAAGGGATCTGAGAAGCACTATGATGATGTTCAAAATTGTTTGGCAAATCGACCGGAGCAAAGAGATGCAAATAAATGTAGCGTTGTCTTGAAGAAATCAGTGGACTGTGGAAACTGTGGTGGGTCGGGTTCTCCCGAGGTGCCGATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGACATAGGCCTCCACCACCTCCGGTGACCTCTCCACCGGACTCGATCGACACCTCTGTCCCAGAAGTTGGAACTCCACCTTCTCCAAGTGAGACCTCCGTTCCATCATTAGCACCATCCCCCGTTCCGTCCTCACCACCTACAGTTGGAGCACCAGTTCCATCCCTGGCTGAATCTCCCGAACCACCAGTTCACTCACCACCACTCCACGTTCACTCACCGGCTCCACCAGTCCATTCCCCGCCACCACCAGTCCATTCTCCTCCCCCACCAGTTCATTCCCCACCACCCCCTGTCCATTCTCCTCCACCACCGGTTCACTCTCCTCCACCACCTGTCCACTCTCCTCCACCACCTGTCCACTCCCCACCACCCCCTGTCCACTCTCCTCCACCACCGGTCCATTCTCCACCACCACCGGTCCACTCTCCACCACCACCGGTCCACTCTCCACCACCACCGATGCACTCTCCGCCGCCACCAGTCCATTCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCCACCCCGGTCCACTCTCCACCCCCGCCGGTGCACTCTCCGCCGCCACCAGTCCATTCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCCGAGCCATTACATTCCCCACCACGCCCTGTCCATTCTCCTCCACCATCGATTCCCTCCCCACCATTCCCTATCCACTATCCTCCACCACCGATTCACTCCCCCTCACCCCCTGTCCACTCTACTCCACCCCCCCCTCCCGTTCATTCCCCACCTCTACTGGTTCACTCCCTACACCCACCGGTCCACTCCCCACCCCCACCGGTTCATTCTCCACCATCACCTGTTTACTCCCCATCGCCAACAGTCCATTCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCCTGTTCTTCTCCACCACCAACATTCGAGGACGTCATCCTCCCAACAAATATCGGCTCCGAATACGCATCACCGCCTCCACCACTATTTCATGGTTATTGA 2576 51.32 MASLHRKQAIHACFLFLFLFFSLPSLSVSVTEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLEKAYVALQAWKLAIYSDPQNITANWVGADVCSYNGVFCAPALDDPNIEVVAGIDLNHGDIAGYLPPEIGLMTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPETIGNSTVSVVSFANNEFHGCIPNTIGHMSNLNQILFIGNKLGGCFPPEIGKLINLTVFDASANGFIGHLPESLSSLQNLEIIDVSNNELRGSVSGGLCKLPKLANFTFSFNYFDGEDAACVESKGSEKHYDDVQNCLANRPEQRDANKCSVVLKKSVDCGNCGGSGSPEVPMTPEDPFDQSPSPRHRPPPPPVTSPPDSIDTSVPEVGTPPSPSETSVPSLAPSPVPSSPPTVGAPVPSLAESPEPPVHSPPLHVHSPAPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPMHSPPPPVHSPPPPTASPPPPPTPVHSPPPPVHSPPPPVHSPPPPTASPPPPEPLHSPPRPVHSPPPSIPSPPFPIHYPPPPIHSPSPPVHSTPPPPPVHSPPLLVHSLHPPVHSPPPPVHSPPSPVYSPSPTVHSPPPPTASPPPPPCSSPPPTFEDVILPTNIGSEYASPPPPLFHGY 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 60171470 60174586 + XM_039051123.1 Bhi12g01876 53688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01876 750 MobiDBLite consensus disorder prediction 407 430 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 400 416 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 420 432 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 435 456 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 457 473 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 475 492 - -
Bhi12g01876 750 PRINTS Proline rich extensin signature 493 518 - -
Bhi12g01876 750 Gene3D Ribonuclease Inhibitor 236 357 IPR032675 -
Bhi12g01876 750 MobiDBLite consensus disorder prediction 396 750 - -
Bhi12g01876 750 Gene3D Ribonuclease Inhibitor 71 235 IPR032675 -
Bhi12g01876 750 MobiDBLite consensus disorder prediction 431 447 - -
Bhi12g01876 750 MobiDBLite consensus disorder prediction 448 466 - -
Bhi12g01876 750 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 504 590 - -
Bhi12g01876 750 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 664 745 - -
Bhi12g01876 750 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 9 403 - -
Bhi12g01876 750 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 589 666 - -
Bhi12g01876 750 MobiDBLite consensus disorder prediction 472 725 - -
Bhi12g01876 750 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 504 590 - -
Bhi12g01876 750 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 9 403 - -
Bhi12g01876 750 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 589 666 - -
Bhi12g01876 750 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 664 745 - -
Bhi12g01876 750 SUPERFAMILY L domain-like 83 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01876 - - - bhj:120092879 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00768 Bhi-Chr1:14563182 Bhi12g01876 Bhi-Chr12:60171470 3.15E-123 dispersed
Bhi09g02023 Bhi-Chr9:56817622 Bhi12g01876 Bhi-Chr12:60171470 6.02E-162 dispersed
Bhi12g01876 Bhi-Chr12:60171470 Bhi05g01086 Bhi-Chr5:39247574 1.01E-63 dispersed
Bhi12g01876 Bhi-Chr12:60171470 Bhi06g02041 Bhi-Chr6:55954992 1.55E-129 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00768 . 42 369 Leucine-rich Repeat extension Gene Families AT1G62440 62.7 1.6e-48 192.2
Bhi02g01114 CCT 53 263 Leucine-rich Repeat extension Gene Families AT1G62440 60.8 1.4e-44 179.1
Bhi05g01965 . 43 372 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 1.2e-43 176.0
Bhi06g02041 CCT 72 241 Leucine-rich Repeat extension Gene Families AT1G62440 70.0 5.0e-42 170.6
Bhi09g02023 . 47 293 Leucine-rich Repeat extension Gene Families AT1G62440 57.9 1.4e-39 162.5
Bhi12g01876 . 44 225 Leucine-rich Repeat extension Gene Families AT1G62440 50.5 8.3e-37 153.3
Bhi02g01114 CCT 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 78.0 2.0e-72 271.6
Bhi06g02041 CCT 41 424 Leucine-rich Repeat extension Gene Families AT4G13340 73.2 7.7e-64 243.0
Bhi01g00768 . 42 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.3 1.6e-53 208.8
Bhi05g01965 . 43 373 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 3.4e-43 174.5
Bhi09g02023 . 18 233 Leucine-rich Repeat extension Gene Families AT4G13340 66.2 4.9e-42 170.6
Bhi12g01876 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.3 7.8e-40 163.3
Bhi02g01114 CCT 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 75.9 1.5e-76 284.6
Bhi06g02041 CCT 37 426 Leucine-rich Repeat extension Gene Families AT3G24480 70.8 3.0e-69 260.4
Bhi01g00768 . 36 367 Leucine-rich Repeat extension Gene Families AT3G24480 66.7 6.8e-53 206.1
Bhi05g01965 . 43 373 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 8.9e-45 179.1
Bhi09g02023 . 18 233 Leucine-rich Repeat extension Gene Families AT3G24480 63.3 1.9e-42 171.4
Bhi12g01876 . 32 406 Leucine-rich Repeat extension Gene Families AT3G24480 50.4 8.6e-40 162.5
Bhi01g00768 . 15 368 Leucine-rich Repeat extension Gene Families AT3G22800 71.3 2.9e-69 260.4
Bhi05g01965 . 40 372 Leucine-rich Repeat extension Gene Families AT3G22800 64.4 2.3e-50 197.6
Bhi02g01114 CCT 65 389 Leucine-rich Repeat extension Gene Families AT3G22800 63.3 3.7e-40 163.7
Bhi02g01114 CCT 39 397 Leucine-rich Repeat extension Gene Families AT5G25550 59.3 2.9e-39 160.6
Bhi06g02041 CCT 58 238 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.2e-37 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92