Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01880 CTATATATTAAATCAAATCCCCCTCTTCCCAAAACAGACAGACGCCATTAACATTAACTTCAAGTTTTTCAACCAACAAATTCAAGAAATTTTCCTACCCGACAGTGACCGCCATAATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACCATATTCCTCCACCTGCTCTCTGTCCTAGACGTTCTGAAACTCCTCATCCAGTCCCTCTTCCGCCTCCTGGGGCTGCCGGAATTTCTCCACTCCGACGCTTTCCCGCCGGAGCTTCAATTTCCCCTGAACCCTCCCCCGTCGGCCCTGCTCCTCCGCGAACTCCTGCCGGTTGTGAAATTCTCGGATCTGCCAGACCCGCCGGAAAGGTGCGCCGTTTGCCTGTACGAGTTCGAGGGGGCGGAGGAGATCCGGTGGCTAACGAATTGTAAACACATATTCCACCGGAGGTGTGTGGACCGTTGGATGGATCATGATCACGACACGTGTCCACTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAATTCAATCAACGGCTGTGGGCTGCCTCTGGTATCGCTGAGACGTTTGAGACGGACTTTAACTCCGTTTTAGGATAGCAATTGCAAAGCCAATTTCCCAACATATGCCCTTTTTTTTCTTCCCAATTATTCTTTTTCTTTTTCTTTTTCTTCTTTAACGAGGGGGGTTTTCAAACTGTATAGATTATATAAATATATAATGTGTATATCATATATATAATATATATGAGAATTTGGGCACTTTTGGCCCAAAATGAAAGCCTTTTTCTATTTTGAATA 806 46.53 MGFPVGCTEVFFPTIFLHLLSVLDVLKLLIQSLFRLLGLPEFLHSDAFPPELQFPLNPPPSALLLRELLPVVKFSDLPDPPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCVDRWMDHDHDTCPLCRTPFVPDGMMDEFNQRLWAASGIAETFETDFNSVLG 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 60269192 60269997 - XM_039019398.1 Bhi12g01880 53692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01880 162 SMART ring_2 84 126 IPR001841 -
Bhi12g01880 162 SUPERFAMILY RING/U-box 69 133 - -
Bhi12g01880 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 153 - -
Bhi12g01880 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 133 IPR013083 -
Bhi12g01880 162 ProSiteProfiles Zinc finger RING-type profile. 84 127 IPR001841 -
Bhi12g01880 162 PANTHER BRH1 RING FINGER PROTEIN 1 153 - -
Bhi12g01880 162 CDD RING-H2 84 127 - -
Bhi12g01880 162 Pfam Ring finger domain 83 127 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01880 Bhi-Chr12:60269192 Bhi02g00212 Bhi-Chr2:4172859 4.62E-14 dispersed
Bhi10g01277 Bhi-Chr10:29750475 Bhi12g01880 Bhi-Chr12:60269192 7.63E-15 transposed
Bhi12g00070 Bhi-Chr12:1930737 Bhi12g01880 Bhi-Chr12:60269192 1.71E-15 transposed
Bhi12g00290 Bhi-Chr12:8446762 Bhi12g01880 Bhi-Chr12:60269192 1.43E-51 transposed
Bhi01g01040 Bhi-Chr1:19092162 Bhi12g01880 Bhi-Chr12:60269192 1.32E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01880 K16281 - csv:101220424 310.457