Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01895 ATGGGTGTTTTCACATACGAAAACGAAGTTGTCTCCGTGATTCCTCCGGCTAAATTCTTTAAGGCATTCATTATTGATGCTGATAATCTTTACCCTAAGATTGTTCCAAATCAGCCACAAACCGAAATTGTCGAAGGAAATGGTGGCCCTGGAACTATCAAGAAGATCACCTTCAATCATGGAGGGCAAGTGAAAACTATAACTCACAAACTAGACGTAGTGGACGAAGCATCGTTGACGTACAAATACACAGTGTTAGAAGGAGATCTTATTTCAGATACTATTGACCAAATTGTAAAGGAAATAAAAGTAACGGCAGGTCCTGATGGAGGATCTATTTTGAAGAGTACTAGCGTTTACCACACTAAAGAAGACAACCAACTTGATGAGGAGAAACTCAAGATCGGCGAAGAAAAGGGATTGGCTCTTTTCAAAGCCGCTGAGAGCTACCTCTTGGCTAATCCCGGCGAATACAACTAA 480 41.04 MGVFTYENEVVSVIPPAKFFKAFIIDADNLYPKIVPNQPQTEIVEGNGGPGTIKKITFNHGGQVKTITHKLDVVDEASLTYKYTVLEGDLISDTIDQIVKEIKVTAGPDGGSILKSTSVYHTKEDNQLDEEKLKIGEEKGLALFKAAESYLLANPGEYN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 60589108 60590017 + XM_039020385.1 Bhi12g01895 53707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01895 159 PANTHER - 1 158 - -
Bhi12g01895 159 Gene3D - 2 157 IPR023393 -
Bhi12g01895 159 SUPERFAMILY Bet v1-like 2 156 - -
Bhi12g01895 159 CDD Bet_v1-like 4 151 - -
Bhi12g01895 159 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Bhi12g01895 159 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 158 - -
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bhi12g01895 159 SMART Bet_v_1_2 1 154 IPR000916 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01895 - - - csv:101214193 283.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g01892 Bhi-Chr12:60538040 Bhi12g01895 Bhi-Chr12:60589108 1.07E-97 dispersed
Bhi12g01893 Bhi-Chr12:60562302 Bhi12g01895 Bhi-Chr12:60589108 3.99E-110 dispersed
Bhi12g01895 Bhi-Chr12:60589108 Bhi07g01701 Bhi-Chr7:47303198 1.38E-06 dispersed
Bhi12g01894 Bhi-Chr12:60571750 Bhi12g01895 Bhi-Chr12:60589108 1.51E-100 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g116 Blo01g00061 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00451 Cam06g0481 Cec06g0485 Cco06g0484 Clacu06g0468 Cmu06g0468 Cre06g1242 . . . . . Csa06g01768 . . . Blo07g00161 . . Bpe05g00824 . . . . . . . . . . . . Bhi12g01895 Tan06g2720 . Lac11g0898 Hepe03g0073 . Lcy12g0774 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145