Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01943 AGATTTTGGAATTTCGCTTTCACTTTACAGACTCACAGTCCCCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAATCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCATCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCACCACGACACTCGCCGGAGCCCCAGTAACTTCCGCGGCGGCGTTGCTGGAGCTAACCGTCGGCCTTTCGACAGCCCGCCTCGCTACTCTACTCCCGCTGCTGCTGGTTTTCGCCCGATGGGAACTGGCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTAGGACAGAAACGGGGTTACCCTTTCGCTGGCCGTGGAAGTTCTCCAGATCATTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCTATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGCTCACTAAATAAACAAGCTTCAGAAAAAGAAGTTAAGGAAATCTTTGCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCCCATAGGGACATGGCACTAGCGGCTATAAATGCTCTTAATGGAATTTTCACGATGAGAGGTTGTGATCAACCATTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCCAAATCTGGAGATTCAAGGGGCCCTCCTGCAATTGGAGGTCCAGGTTTTGGCTCTCGCTTTCAAGCGCCTGGGCCAAGACCAACGCCTAATTTTGGTGAATTTATGGGTGATCAAATTCCAATTGATGTGCGAGGTTTCAGGCCACCTGTTGATGCTGGATCTCATCCCTTTGGGGGTCAGTTGCCTCCTAGGTCCAGTGAAATGGGACTACCTTTGAATATGGGTGGTCCTGCTGGTGGGTTCAGAGGTCCCAGTCAAGGGTTAGTCAATCCAGCATCCTTGGCTTCTCAACAGAATTTTAATCAGTCTGCAAGCCAACATCCACCGTTAGGCCTGCAAGCTTCACCAGTACTAAAAACTATTCAGTCACCGAAACAATTGCCACCTTCGAGTCAATTGCACCCTCATGCTTCTCCCTATTCTCAGACACATACATCTCCAGCATTAGCACAACAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCTTTTGGTCAGCCTGCACCTTCCCAAGGGTCACCTGGTTTAGGTGCGCAGTTGCCGGTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGCAACACATACTCCTTTAAGTATGAACTTACAATCCCATGCTGCTGCCCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCATCTCAGAATTCACCTTCTCAGTTAGCGCACATGCTGTCACAACAAAAACAAACTCTACAGGCTAGGTTCCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGCAGTTGCAGCTGATACAACCATCAAATCAAAGTTCAACATTGCAACTGAGTTCCCAGACTATTAAGCAGCAGATGCCCTTGCAGTCTCACTGGGGAGGGGTTGTGCCACAGACAGCTGCCAGCGCCGCTTCTGCAACTTCAGATGCACATACATCTACAGTTCCTCCTGTAGCCATAAATACCCAAGTTGTGGCTCCTGTGAAATGCAATTGGACCGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAAACCTGAAGAGCTTTCGGCGATTGAGCAACAACAAAAGCCACCGGTACTGCAGCCTCATAACCAGCCACATCCTCAAGTACTATCTAGCCAGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAATTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGCCAGCCAATAGCTCAGTAAATGATCCTACTCGCTTCCACCAGGGATTTCCGGCAACTCAAGAGTGGGCATGGAAGAATAAATAATCAGCAGGAGCTTGAAGTGGAACAATGGGATCTACATTCATCTGCCATTTAAGTTGTGAAATGAAGATATTAGGCTCCTGTTGCCTTGAAGTTCAAGGCAGGGAACAGCTTTGTAAGGTACAGAAACTACAGATAAGATGAGCAATGCTTCAAGGGAGTTTGTCTGCCGCAAATTCTCTTTACCGTGAGATGATATTCTGTTGCAGTTAATACCGTGGCACCATAGAGAACATCTAAATGCATCGGCTTTGTTATAACATAATGCTATGAATGTATCATATTGCTTAAAGTTCCTGTATTGCTCATAAAGCGTTTATGTACTTATAAATTAGTCTTTTGTGCTGCCTTCTTAGTTTCTCAGCAAATACTGGCGGCTCTTTTGTCATGCACATCGTAAAAGTTGGGAGTTCAAGAGGATATGTAGACTTTCTTTTGTA 2783 47.22 MGTGGGFRPIPGPGGGGFGSGFQPPPVVGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFAPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPKSGDSRGPPAIGGPGFGSRFQAPGPRPTPNFGEFMGDQIPIDVRGFRPPVDAGSHPFGGQLPPRSSEMGLPLNMGGPAGGFRGPSQGLVNPASLASQQNFNQSASQHPPLGLQASPVLKTIQSPKQLPPSSQLHPHASPYSQTHTSPALAQQHNQPQNFNSSGQLPFGQPAPSQGSPGLGAQLPVSQAMVQQGASSAAATHTPLSMNLQSHAAAPNQQQLPTPIQPSQNSPSQLAHMLSQQKQTLQARFQSSQQAFSQLQQQLQLIQPSNQSSTLQLSSQTIKQQMPLQSHWGGVVPQTAASAASATSDAHTSTVPPVAINTQVVAPVKCNWTEHTSPDGYKYYYNSVTGESKWEKPEELSAIEQQQKPPVLQPHNQPHPQVLSSQQLSQTPQAQLQIQFQTQMPHPQPLQQPSFHSQEGAYTQLQPANSSVNDPTRFHQGFPATQEWAWKNK 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 61928102 61943533 - XM_039051239.1 Bhi12g01943 53755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01943 679 ProSiteProfiles WW/rsp5/WWP domain profile. 552 585 IPR001202 GO:0005515
Bhi12g01943 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 208 IPR000504 GO:0003723
Bhi12g01943 679 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 117 IPR000504 GO:0003723
Bhi12g01943 679 SMART ww_5 553 585 IPR001202 GO:0005515
Bhi12g01943 679 Coils Coil 468 488 - -
Bhi12g01943 679 MobiDBLite consensus disorder prediction 596 679 - -
Bhi12g01943 679 Pfam WW domain 556 583 IPR001202 GO:0005515
Bhi12g01943 679 SUPERFAMILY RNA-binding domain, RBD 143 247 IPR035979 GO:0003676
Bhi12g01943 679 SMART rrm1_1 53 129 IPR000504 GO:0003723
Bhi12g01943 679 SMART rrm1_1 144 219 IPR000504 GO:0003723
Bhi12g01943 679 MobiDBLite consensus disorder prediction 348 407 - -
Bhi12g01943 679 CDD RRM2_FCA 144 223 IPR034645 -
Bhi12g01943 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 133 IPR000504 GO:0003723
Bhi12g01943 679 MobiDBLite consensus disorder prediction 596 666 - -
Bhi12g01943 679 Gene3D - 139 230 IPR012677 -
Bhi12g01943 679 MobiDBLite consensus disorder prediction 436 462 - -
Bhi12g01943 679 MobiDBLite consensus disorder prediction 218 317 - -
Bhi12g01943 679 PANTHER TRANSFORMER-2-RELATED 23 651 - -
Bhi12g01943 679 SUPERFAMILY WW domain 557 589 IPR036020 GO:0005515
Bhi12g01943 679 Gene3D - 554 596 - -
Bhi12g01943 679 CDD WW 555 585 IPR001202 GO:0005515
Bhi12g01943 679 MobiDBLite consensus disorder prediction 1 49 - -
Bhi12g01943 679 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 23 651 - -
Bhi12g01943 679 SUPERFAMILY RNA-binding domain, RBD 28 137 IPR035979 GO:0003676
Bhi12g01943 679 Gene3D - 40 138 IPR012677 -
Bhi12g01943 679 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 223 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01943 - - - csv:101205530 1138.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00981 Bhi-Chr9:22282314 Bhi12g01943 Bhi-Chr12:61928102 5.31E-48 dispersed
Bhi11g01272 Bhi-Chr11:37595712 Bhi12g01943 Bhi-Chr12:61928102 3.64E-14 dispersed
Bhi12g01943 Bhi-Chr12:61928102 Bhi01g01179 Bhi-Chr1:23157354 7.86E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
Vvi7g415 . . . . Bpe03g00494 . . . . . Cma01g00278 Cma14g00942 Car01g00250 . . . . . . . . . . . . . . . . . . . . . Cone11ag0706 . . Chy04g01168 . . . Bda05g00406 . . . . . . Cmo01g00286 . . . . . Cpe02g01533 . Bhi12g01943 . . . . . Lcy12g0865 Cla10g01104 Cam10g1135 Cec10g1168 Cco10g1146 Clacu10g1155 Cmu10g1931 Cre10g1317 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37