Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01965 GCCATCCATAAAAATTTCCCTTTGACAATTCTCCAATAACCTATTAAATAGCCGGAATACAAAGTTGCCGGAGCAGAGGGTGGAGAGAGGCGGAGATGAGCTCATCGGCGCATCAACCTTGTTGTGGGTTGAAGTCGAGGTATTCCTATTCCCCTCTTTCTTCATGGCGACTTTCAGCTTCCAGTTGGAACTGGAACCGATTTCCTCCAAAGGAATGGCGTAAACTGCTTCCATTAGTTTCAGCTGCAGCTTCTTCCCCTTCTCCCATTTCCAATGCACAGACCAAAGAGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACATCCCCCATGGATGGCGTCTCCTTCACTCTTGAAGACTTCCATGCCGCTCTTGCAGATTACGACTTTGTTTCTGAACTCGGAACCAAGGTTAAAGGTACTGTATTCTGTACCAATGCTAATGGGGCACTGGTTGATACTGTAAAGGGAACTGCATACTTGCCCACCCAAGAGGCATGCATTCTTAAAATAAAACATGTAGAAGAAGCAGGTATATATCCTGGTTTAGAAGAGGAGTTCATAATTATTGCTGAACAGGAAGATGGTGATGGCTTAATTCTGAGCTTGAGAAGTGTCCAGTATGGCCTTGCATGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGAGTAGTAGTTCTTGTGGAAGGCCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACGTCTGAAATTTGTTGAGGTCGATGAAGAACTATCTCGGCTAATCCTAAGTAACTCCAAGGCCATTGTTAGCCAAGCAGAGCTAAGAATTGGTTCAGTAGTTACTGGGACCGTGCAGATTCTGAAACCATATGGAGCCTTTATTGACATCGGTGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATTAGATATTGCAACTGTTCTTCAACCAGGAGATGTGCTTAAGGTCATGATTTTGAGCTATGACCAGAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTTTTTGAGAAGGCTGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCTCAAGCAGAAGCAATGGCTCGTGCTGGCCTTCTCGGATGTCAACCCGAGAGTGGATAATGTGGGATTGACTCAGCTTTGATGGGGTATCGAGTGGGCTTACACTTGAGTTACCTGCAGAGGTTGTAGATCTCACATTGATAGTTTCCTCCACAGAATAATAACGGAGAGTATGATATGAGTGATTCTACGAACAAATGATAGCCACCCTTCACCATTACATCCAATTCCTTGGTATTGGCTCTTAGCCTGGAATAATTGTTTGTATTTATTTTCTAACATAGAATTTGTAGTTGCTTGTATATTGCGAGAAAGTAATCATGTAGCTGACTTTTTAGAATTTTAAGAGGCCCAATACGCATTGCTACTTCGTTTTATGTTTGTT 1593 43.13 MSSSAHQPCCGLKSRYSYSPLSSWRLSASSWNWNRFPPKEWRKLLPLVSAAASSPSPISNAQTKERLKLKQLFKEAYERCCTSPMDGVSFTLEDFHAALADYDFVSELGTKVKGTVFCTNANGALVDTVKGTAYLPTQEACILKIKHVEEAGIYPGLEEEFIIIAEQEDGDGLILSLRSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGVVVLVEGLRGFVPFSQISAKSTAEELLNKELRLKFVEVDEELSRLILSNSKAIVSQAELRIGSVVTGTVQILKPYGAFIDIGGINGLLHVSQISQNHILDIATVLQPGDVLKVMILSYDQNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQTFRQRIAQAEAMARAGLLGCQPESG 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 62317083 62321392 + XM_039050665.1 Bhi12g01965 53777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01965 390 Pfam S1 RNA binding domain 195 258 IPR003029 GO:0003676
Bhi12g01965 390 Pfam S1 RNA binding domain 269 340 IPR003029 GO:0003676
Bhi12g01965 390 Gene3D - 267 344 IPR012340 -
Bhi12g01965 390 PANTHER 30S RIBOSOMAL PROTEIN S1 48 390 - -
Bhi12g01965 390 ProSiteProfiles S1 domain profile. 109 178 IPR003029 GO:0003676
Bhi12g01965 390 SUPERFAMILY Nucleic acid-binding proteins 107 204 IPR012340 -
Bhi12g01965 390 CDD S1_RPS1_repeat_hs4 272 340 - -
Bhi12g01965 390 CDD S1_RPS1_repeat_ec2_hs2 196 258 - -
Bhi12g01965 390 Coils Coil 357 377 - -
Bhi12g01965 390 SMART S1_6 194 260 IPR022967 -
Bhi12g01965 390 SMART S1_6 107 178 IPR022967 -
Bhi12g01965 390 SMART S1_6 270 340 IPR022967 -
Bhi12g01965 390 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 48 390 - -
Bhi12g01965 390 SUPERFAMILY Nucleic acid-binding proteins 263 346 IPR012340 -
Bhi12g01965 390 Gene3D - 188 266 IPR012340 -
Bhi12g01965 390 ProSiteProfiles S1 domain profile. 196 260 IPR003029 GO:0003676
Bhi12g01965 390 ProSiteProfiles S1 domain profile. 272 340 IPR003029 GO:0003676
Bhi12g01965 390 SUPERFAMILY Nucleic acid-binding proteins 191 263 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01965 K02945 RP-S1, rpsA; small subunit ribosomal protein S1 - nnu:104607070 493.041
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi01g01107 Bhi12g01965 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01160 Bhi-Chr2:27021590 Bhi12g01965 Bhi-Chr12:62317083 1.15E-10 dispersed
Bhi02g01161 Bhi-Chr2:27021595 Bhi12g01965 Bhi-Chr12:62317083 1.15E-10 dispersed
Bhi04g01583 Bhi-Chr4:39934923 Bhi12g01965 Bhi-Chr12:62317083 4.48E-27 dispersed
Bhi04g02183 Bhi-Chr4:59988601 Bhi12g01965 Bhi-Chr12:62317083 4.32E-154 dispersed
Bhi04g02184 Bhi-Chr4:59989799 Bhi12g01965 Bhi-Chr12:62317083 4.32E-154 dispersed
Bhi01g01107 Bhi-Chr1:21366816 Bhi12g01965 Bhi-Chr12:62317083 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g25 Blo01g00046 . . Bda08g00318 . . . Bma05g01012 . Cmo17g00378 Cma06g01576 . Car06g01339 . Sed02g1123 Cpe08g00140 . Bhi01g01107 Tan10g1093 Cmetu03g1502 Lac11g1008 Hepe05g1360 . Lcy11g1322 Cla06g00406 Cam06g0428 . . Clacu06g0414 Cmu06g0414 Cre06g1194 . Cone15ag0714 Cone7ag0089 . Lsi05g01405 . . Cme06g00815 . . . . Bpe05g00810 . . . . Cmo06g01570 . . Cma17g00389 . Car17g00359 Cpe12g00340 . Bhi12g01965 Tan06g2800 . . . . Lcy12g0886 Cla05g00723 . . . . Cmu05g0745 . . Csa03g01535 Chy06g00772 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013392 0 1 0 0 0 1 1 0 0 0 1 1 1 0 1 1 1 0 1 1 0 0 1 1 1 0 1 1 11 0 27