Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01972 AAACCCTTTTAGCTCCTGAATTGCCTGCCTCATTATCAAGAATACTCTGTACCATTTGCCTAGATCGCCAGTCGGAAGAAGATGGTAGCTGAAGCTGAGATCAAATGCCCAAAATCCGTTCCTCTCATGAAAATCAATTATCATCTTCGCGTAACCGACGATCGCGATCTTCAGATCGATTTGCCGCACCCTTCTTCCTCACCTGTCTTTGCCGAGGCAGTTAGTTGCTCAGATATTGTTGAAGATGTGCATATAAAATCAACTGCCATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTGCCCACCTCAGATCTGTGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCACGCAGCTGCTTTTCTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCTGATTGGTTAAAAATGCAGGACATTGATTCTATTTCCCTGAAAGATTTGGAGAACTCTCATCGCAAAGCATTCCAACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGTGGGACAACTGCATTAACGGCGTTGGTTCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGACTGCCGAGCAGTCTTATGTAGGAAAGGTATAGCAGTCCCAATGTCTCAAGATCACAGACCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGGTTCGTAGATGATGGGTATGTTAATGGCTATATTTCAGTGACCAGGACCTTAGGGGATTGGGACCTGAAATTACCAAATGGGTCCTCATCACCTCTCATTGCTGATCCACAAGTGGAGCATGTTATTTTAACAAATGATGACGAGTTCTTGATTCTTGGCTGTGACGGGATTTGGGATGTTATGTCAAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCTCGAGAATTAGTCCAGGAAGCTTTGCGTCTCAACACATCAGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCGAGCTGCGTTCCTCAGCAGCGAATATGCAAGTCATGTAATCTGACAGAGGAGGCTACAAGTAGATTGAGGAGCTTGTTAGAAGGTAACTGATTATCGCATTTTCAAGCATAATCAATTCTGGTCTGTTTATGATTTTGCTTCAGAAGAAACCCAAAAAAAGAAAAAAGATAAAAAAAAAAGCAGCCAGCAGTTTTGTAGGGATACAGAGAAACTGATTAACATGACTGCGGTCAATTAGATTTTGGAACTAGCCAACCTAATAGGAATTTTGTTCCCTCCGGCATTATTTGTAAAGTGATAATGAGAAGCTTTTTGATCCCCTGGAGGCCTCGGAATTTGGCCTTCTTTTTGTTTATTTTATGTGTTTCTGTCTTTCTTTGGATTTTTAGTTGAACAAAGCATGTAGCACTCTAGAAGGCTGAAATGGCATAAAACAATGGTGCCCATGCATTTTGTTTCTTTTTTGTTAATTTTCTTTCAGATTTAAAAGATTGCGGGATTGAAAGATATAACCATCGATATTTGAGATGGTAATTAGTATCTTATCTATCGAGCTGATTCAACTATTTCTGTTCAA 1687 41.43 MVAEAEIKCPKSVPLMKINYHLRVTDDRDLQIDLPHPSSSPVFAEAVSCSDIVEDVHIKSTAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSVFKCSMPNGFYAVFDGHGGPHAAAFLKRNAMRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGIAVPMSQDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNGSSSPLIADPQVEHVILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPSCVPQQRICKSCNLTEEATSRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 62369543 62375684 - XM_039019527.1 Bhi12g01972 53784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01972 372 Gene3D - 53 344 IPR036457 -
Bhi12g01972 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Bhi12g01972 372 PANTHER PROTEIN PHOSPHATASE 2C 1 356 IPR015655 GO:0004722|GO:0006470
Bhi12g01972 372 SMART PP2C_SIG_2 85 340 IPR001932 -
Bhi12g01972 372 SMART PP2C_4 60 338 IPR001932 -
Bhi12g01972 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Bhi12g01972 372 SUPERFAMILY PP2C-like 59 341 IPR036457 -
Bhi12g01972 372 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 356 - -
Bhi12g01972 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Bhi12g01972 372 CDD PP2Cc 69 340 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi09g00773 Bhi12g01972 CCT
Bhi09g00773 Bhi12g01972 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00773 Bhi-Chr9:17324516 Bhi12g01972 Bhi-Chr12:62369543 2.13E-134 dispersed
Bhi12g01972 Bhi-Chr12:62369543 Bhi09g03047 Bhi-Chr9:78889607 2.63E-41 dispersed
Bhi12g01971 Bhi-Chr12:62369543 Bhi12g01972 Bhi-Chr12:62369543 0 tandem
Bhi12g01972 Bhi-Chr12:62369543 Bhi12g01973 Bhi-Chr12:62369543 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2709 PF00481 PP2C 2.80E-64 CL0238 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01972 K14803 - csv:101207477 706.827