Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g01993 AATTTAGAGTCTTGAAGAGGGGGATTCGTACAAATTTCCCAAAAAAATCCCTTTGTCCACATTAAAAATCTCACTCACTCATCTACTTCATTTCCCGAAGCTCTGCCGAGGGAACTCCAAGCTATGGTTTCCTTCTCCTTCTCCTCCTCGCTCCTCCCTTCTTCAGTTTCTTTCGATCATGGCGCCACTTTCTTTTTCCCCATCTTTGTTTCATCTTCTTCGCACTCCAATTCTCCCATTGTTCGCTGTGCATTTGCAGCCCCCACTAGAAAATCCCCTCCTCCATCTATTTCTTCTTCATCACCTGCTAAGAAGAAGCACTGGAAGCAAGGGGAATTTCCAGGAATTACAGAGACATCCACCCCAAGGAAGACCCCTCTCAAGAATGTCAAAAAGAAATTAGACCGCAAGAACAACGCCAAGGCTTGGGCCAACACCGTCACTGAAGCCTTGTCCGACCATATCACTAACAAACGGTGGCTTCAAGCTCTTGAGGTGTTTGAAATGCTCCGAGAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCCGGCCAACCACATCGTGCCCGTTCGCTTTTTGACACAATGCTTGAAGAAAGATGTGAACCTACCTCTGAACTTTACACTGCTTTGCTTGCGGCGTATTGTCGGAACAATCTCATTGATGAAGCATTCTCCACTCTTAATCTCATGAAGACCCTCCCTGGCTGTCAACCTGATGTCTACACTTATAGTACCTTAATCAAGGCTTGTGTTGATGCTTCTCGCTTTGAAATAGTCGAATCGTTGTATGAGGAAATGGCTGAACGACTGATAACTCCAAATACCGTGACCCAGAACATAGTCTTAAGTGGATATGGCAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTATTAGGAATGCTTGAGAGCTCAACTTGTAGACCGGATGTGTGGACAATGAATATAATTCTTAGTGTGTTTGGTAATAAGGGGCAGATTGAAATGATGGAAAGATGGTATGAGAAGTTTCGTAACTTTGGTATTGAGCCAGAAACACGTACATTTAACATTTTGATTGGTGCTTATGGGAAGAAGAGGATGTATGATAAAATGTCTTCTGTGATGGAATATATGCGCAAACTGCAGTTTCCATGGACGACATCAACATACAACAATGTGATTGAAGCTTTTGCTGATGTGGGAGATGCAAAAAACATGGAGTACACATTCGAGCAAATGCGTGCTGAGGGCATGAGAGCAGACACCAAGACATTCTGTTGCCTTATAAACGGATATGCTAATGCAGGTCTCTTCCATAAGGTAATTAGCTCAGTTAAGTTGGCAGGAAAATTCGAGATTCCAGAGAATACCTCATTTTATAATGCGGTTATATCTGCATGTGCTAAGGCTGAGGATCTGATGGAAATGGATAGAGTATTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATTATGATAGAAGCTTATGGAAAGGAAGGCATGAATGATAGAGTTCATTACTTGGAGCTGGAAAAGAAACAGGTGATCGATTATGCTTCTAATAATGAGTGATTTCGAGCAATGAAATGGAATGCAAAATTGGTGCATGTTTGAGAACTTGGACCCTACGTATGCCTGTTCCACCAAGGGCCCTATCCTCCAGCCGTTTAAATTGCTGCTACATTGGATACATCTCAGAAGATCAAATCCACCCTTCGAATTGCATCCTCTATGCCGAGTTTTTTTCACCAGTGTTTTGATGATCCTTCAGGCACATATTTTCTGTGGGAAGTCTGCGGCTAACTGGATTTTATGTATAGAGCTTTTGTGACAATGAAGCTGATCAGTATTAGTGTCTCCCAATTCTAGTTATATTAGTTTTAAGCGAACTTGCTTTTTGTTCTGGACAAATTGACATGCAATGAGAAAACGTACAAGACTCTCGAGTCCGCACACGGTGGCCACCTGGCCTTGTAAACCCATGTGAGCTACGTTAAAGGTATTTGCTTACAAGGGCACAATATTCTAGCGAGCAACAATTGACATTGCCTCCTTGTGGCTTTCATCCCAAAAATTCAAACAATATCACAGTTGTTCAAGACTTCTTGAAA 2144 41.88 MVSFSFSSSLLPSSVSFDHGATFFFPIFVSSSSHSNSPIVRCAFAAPTRKSPPPSISSSSPAKKKHWKQGEFPGITETSTPRKTPLKNVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARSLFDTMLEERCEPTSELYTALLAAYCRNNLIDEAFSTLNLMKTLPGCQPDVYTYSTLIKACVDASRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESSTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKFEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYGKEGMNDRVHYLELEKKQVIDYASNNE 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 62601574 62604081 - XM_039019896.1 Bhi12g01993 53805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g01993 493 Pfam Pentatricopeptide repeat domain 349 397 IPR002885 -
Bhi12g01993 493 Pfam PPR repeat family 279 326 IPR002885 -
Bhi12g01993 493 Pfam PPR repeat family 420 466 IPR002885 -
Bhi12g01993 493 Pfam PPR repeat family 177 221 IPR002885 -
Bhi12g01993 493 MobiDBLite consensus disorder prediction 48 89 - -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Bhi12g01993 493 PANTHER OS03G0309800 PROTEIN 30 488 - -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Bhi12g01993 493 Pfam PPR repeat 141 170 IPR002885 -
Bhi12g01993 493 Pfam PPR repeat 249 274 IPR002885 -
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Bhi12g01993 493 PANTHER ATPASE EXPRESSION PROTEIN 3 30 488 - -
Bhi12g01993 493 Gene3D Tetratricopeptide repeat domain 410 485 IPR011990 GO:0005515
Bhi12g01993 493 Gene3D Tetratricopeptide repeat domain 204 272 IPR011990 GO:0005515
Bhi12g01993 493 Gene3D Tetratricopeptide repeat domain 344 409 IPR011990 GO:0005515
Bhi12g01993 493 Gene3D Tetratricopeptide repeat domain 273 343 IPR011990 GO:0005515
Bhi12g01993 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 279 IPR002885 -
Bhi12g01993 493 Gene3D Tetratricopeptide repeat domain 79 203 IPR011990 GO:0005515
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 141 173 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 318 346 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 353 385 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 424 456 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 283 314 IPR002885 -
Bhi12g01993 493 TIGRFAM PPR: pentatricopeptide repeat domain 176 210 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g01993 - - - csv:101204445 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00675 Bhi-Chr9:14465494 Bhi12g01993 Bhi-Chr12:62601574 4.55E-07 dispersed
Bhi09g00676 Bhi-Chr9:14465494 Bhi12g01993 Bhi-Chr12:62601574 4.15E-07 dispersed
Bhi12g01993 Bhi-Chr12:62601574 Bhi08g01439 Bhi-Chr8:42443271 1.91E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g249 . Blo12g00376 Bda03g00833 . Bpe04g00789 . Bma04g00732 . . . . . . . . . . . . . . . . . Cla06g00396 Cam06g0417 Cec06g0425 Cco06g0425 Clacu06g0404 Cmu06g0404 Cre06g1183 Cone14ag0683 Cone15ag0695 . . . . . . . . . . . . . . Sed09g0597 . . . . . . Cpe12g00347 . Bhi12g01993 Tan06g2812 Cmetu11g0485 Lac11g1038 Hepe03g0014 . Lcy12g0899 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008423 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 2 1 35