Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02022 TCAAAAGGATAATTTGGTGCCAACTACAAATCGAGATCGTCGAGTTCAAGCTAAGGAACTTGCAGAGGCTAGGAAGAAGAAAAGGAAACGGCATTATGATTTGGAACATATTTTGAGGATCCAAAGATGGGTAGGCTAAGTTTTCTTTTAATCCTTCCTACCCCTAACTATCCAATGTGTGCAGGAGCTTGCACATCTATGGGAGGAAATGAGAAAGCGTGATATCACTAAAGAAGATAGATCCAAATTGATAAGTAAAGCATTAGAAAACATGAAGGGGAAGATCCCTGAAATTGCAGGTTCCCACGTATCATCTCGTGTGCTTCAGACTTGTGTCAAGCACTGCACAGATGCCGAGAGAGAAACAGTGTTCGAGGAACTTAAGCCTCATTTTCTCACTCTTGCGTGCAACACTTATGCAGTTCATCTGGTGAAGAAAATGTTAGATAATGCCTCGAAAAAGCAGCTGGCAGTGTTTATCTCCTCTTTACGTGGCCATGTAGCTTCTCTTCTTCGTCACATGGTTGGATCTTTAGTTGTTGAACATGCATACCATTTAGCAAATGCAGCGCAGAAACAAACTCTTCTACAGGAACTTTATTCATTGGAACTTCAGCTTTTTAAGGATCTGGTCTCAGTGAAAGAAAGCAGGTTAGTAGATATAATTTCAAAATTGGACATTCAGAAAGCTTCAGTCTCACGACATATGACATCGGTTATCCAGCCAATTTTGGAAAAAGGGATAGTTGACCACTCTATCATACATAGGGTGTTAGTGGAATACTTTACCATAGCTGATAAGACATCTGCCGCAGATGTAATCCAACAGTTGTCCAGTTCACTTCTTGTTAGAATGATTCACACTAGAGATGGATCGAGGATTGGTATACTTTGCATAAAGCATGGCAGTGCTAAGGAAAGAAAGAAAAGCATCAAGGGAATGAAAGGCCATATGAAGAAGATAGCACATGAGCAATACGCAAGTATGGTTCTCGTGTGCATTATCTCAGTTGTTGATGATACAAAGCTTATTAGGAAGGTTATCATTAATGAGCTTGAAAAAGATTTGAAGGAGCTCATTTTGGATAAGAATGGAAGGCGTGTATTACTGCAACTGTTGCATCCAAATTGTTCGCGCTACTTCAGTCCCGACGATCTTTCTTCTTTAAATTTATCAATACCTTCTCTTTGCAACAAGAGTGAGTCGGGAGTTGACAGAGCTGAAGAGAAGGTGGAGTGTGACACGAGCAAAATAAAAGGTGAGGTTGATGGAAGCAAGGTTTCTGCTGAGGGCTCTGAAGTTGTGGAGGGTGGTAAAAAAGATCCTCTTATCAGAAGGCATGAGTTGTTGGTGGATAGCGGGCTCGCTGAGAAGCTTGTAGACATATGCATCAACGATGCTGGGGAAATATTAAGGTCAAATTTTGGCCGAGAAGTGATGTACGAGGTTGCTACTGGGGGTGCTGATGGCATTCTTCAACCGAAATTGGGTGAAAAGTTGAGTGCTTTGTATGAAGTTATTGCTTCACTTGCAGCAGAGCCTAAATCTGAAGACGCAGCCTCAGAAGATGAGCATGTCTTTGAAAATTTCCACTCTAGTAGGACCATAAGAAAGCTAATCTTGGACTGCCCTGCTTTTGCCCTCACTTTGTGGAACAAAGCACTTGAAGGGAAATCCAAAATGTGGGCCCGAGGTCACAGCTGTAAGATAGTTCAAGCTTTCCTGGAATCCTCGGACTCCAAAGTACGTGAGATTGCAAGAGTAGAGTTGCAGTCCTTGATAGACGAAGGTGTACTCAAAATCCCAGACACGAAGCAGTCTGCCAACAAAAGTTAAATCCCAATTTTGTTTGATGAAAGGAACTCAAATCTCCATAAACGTCCACATACCAGAGGTACTGTTAAACTACAGCATATCCATTGAATTGTTGTCTCCGGAAATGGGTCCGACTTCTGAGGTAGAATTGTACCATGCAAGTAGACCCTGTTCTCCAAAAAACGATTATACATTTCAAACTCTTAACCAGCTTAAAAGTTTTGTCATTTGCTTTGAAGTTC 2058 41.5 MRKRDITKEDRSKLISKALENMKGKIPEIAGSHVSSRVLQTCVKHCTDAERETVFEELKPHFLTLACNTYAVHLVKKMLDNASKKQLAVFISSLRGHVASLLRHMVGSLVVEHAYHLANAAQKQTLLQELYSLELQLFKDLVSVKESRLVDIISKLDIQKASVSRHMTSVIQPILEKGIVDHSIIHRVLVEYFTIADKTSAADVIQQLSSSLLVRMIHTRDGSRIGILCIKHGSAKERKKSIKGMKGHMKKIAHEQYASMVLVCIISVVDDTKLIRKVIINELEKDLKELILDKNGRRVLLQLLHPNCSRYFSPDDLSSLNLSIPSLCNKSESGVDRAEEKVECDTSKIKGEVDGSKVSAEGSEVVEGGKKDPLIRRHELLVDSGLAEKLVDICINDAGEILRSNFGREVMYEVATGGADGILQPKLGEKLSALYEVIASLAAEPKSEDAASEDEHVFENFHSSRTIRKLILDCPAFALTLWNKALEGKSKMWARGHSCKIVQAFLESSDSKVREIARVELQSLIDEGVLKIPDTKQSANKS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 63354426 63360305 + XM_039020354.1 Bhi12g02022 53834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02022 542 PANTHER UNCHARACTERIZED 1 536 IPR040059 GO:0003723
Bhi12g02022 542 SMART pum_5 208 243 IPR001313 GO:0003723
Bhi12g02022 542 SMART pum_5 21 56 IPR001313 GO:0003723
Bhi12g02022 542 SMART pum_5 93 128 IPR001313 GO:0003723
Bhi12g02022 542 SMART pum_5 57 92 IPR001313 GO:0003723
Bhi12g02022 542 SMART pum_5 282 322 IPR001313 GO:0003723
Bhi12g02022 542 SMART pum_5 244 281 IPR001313 GO:0003723
Bhi12g02022 542 Gene3D - 1 333 IPR011989 -
Bhi12g02022 542 ProSiteProfiles Pumilio RNA-binding repeat profile. 57 92 IPR001313 GO:0003723
Bhi12g02022 542 Pfam CPL (NUC119) domain 368 471 IPR012959 GO:0003723
Bhi12g02022 542 ProSiteProfiles Pumilio RNA-binding repeat profile. 93 128 IPR001313 GO:0003723
Bhi12g02022 542 ProSiteProfiles Pumilio RNA-binding repeat profile. 21 56 IPR001313 GO:0003723
Bhi12g02022 542 Pfam Pumilio-family RNA binding repeat 61 89 IPR001313 GO:0003723
Bhi12g02022 542 Pfam Pumilio-family RNA binding repeat 36 58 IPR001313 GO:0003723
Bhi12g02022 542 Pfam Pumilio-family RNA binding repeat 97 130 IPR001313 GO:0003723
Bhi12g02022 542 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 1 307 IPR033133 GO:0003723
Bhi12g02022 542 SUPERFAMILY ARM repeat 2 314 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02022 K14844 PUF6; pumilio homology domain family member 6 - csv:101210633 969.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g02022 Bhi-Chr12:63354426 Bhi01g02866 Bhi-Chr1:71182086 9.37E-06 dispersed
Bhi12g02021 Bhi-Chr12:63353418 Bhi12g02022 Bhi-Chr12:63354426 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g138 . . . . . . . . Cmo08g01220 . . . . . . . . . . . . . . . Cla06g00454 Cam06g0484 Cec06g0488 Cco06g0487 Clacu06g0471 Cmu06g0472 Cre06g1245 . . . . . Csa06g01771 Chy11g01540 . . Blo07g00164 . . . Bpe13g00677 . Bma06g01487 . . . Cma08g01249 . Car08g01122 . . Cpe17g00043 Bhi12g02022 Tan06g2715 . . Hepe03g0075 . . . . . . . . . Lsi09g01460 . . Cme11g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010706 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 2 1 31