Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02081 CTCACTCATGGCTGGTTACGTCAACAACGGTAGGCCGACCACCGCTCTTTTGTTGTTCAGGGCAATGTCGAGAAGTCCGATTGTTCCCAACGACTTCACTTTCACCACAGCGATTAAGGCCTGTTCGATCCTTTCGAATTTAAGACATGGCGAAAAGTTACATGCCCATGTTGAGATTTTTGGTTATGGAGAATGCTTATGGCGACGATGCGTTAAAAGTATTTAGGGAATTCAGTAGTTGGAGTTCTGAACATCCAAATCCTCACATGTTAGCTAGTGTGATTAGTGCTTGTGCAAGCTTGGGTAGGCTGATTTCGGGAAAAGTTATGCACGGTGCAGCGGTTCGTCTTGGCTCTGATTCGAGCAACGTAGTTGCAAGTGTGTTGGTTGATATGTATGCTAAATGTGGGAATCTTGAGTATTCTGATAAGGTCTTTAACAGAATTTCAAACCCTTCTGTTATTCCTTATACTTCAATGATTGTGAGCACAGCAAAATATGGATTTGGGAGAAAGTCTCTTCAACTCTTTGAAGAAATGGTGAGAAAAGGATTGAAACCTAATCATATCACTTTTGTTGGAGTTTTGCATGCTTGTAGCCATTCAGGACTCCCTAATGAGGGATTGGATTATTTGACATCCATGTATGAGAAATATGGGATAATGCCTGAGATTAAGCATTATACGTGTGTTGTCGACATGTTAGCTCGAGCTGGGCAGCTAGATAAAGCCTACGAATTAGCAAAATCGATGGAGGTAGTGTCCGATGACAAGGCACTGTTGTGGGGAGCATTGCTTTCAGCTAGTAGGTGTCATGGCAGGGTAGATATTGCAGCTGAAGCTTGTAAGCAACTGGTGAATTCCAATGAACAAGTCGCCGGTGCATACGTCACTTTGTCGAATGCCTATGCGTTAGCTGGAGATATGGAGAAGGCTCAAAGACTCCGAGTTGAGATGAAACATACCGGAGTTCAGAAAGAACCAGGCTGCAGTTGGATCGAGATAAAAGATTCGAGTTATGTATTCTATGCCGGGGAAATAACGTCGTCCCCACGAGGTGATGAAGTGTTGTGTTTACTGCGAGAGTTGGACCGGAAAATGAATGATCGAGGTTATGTAAGAGGAAGCAGAGGGTTGGCGTTTGTTGATATAGAAGAGGAGGCAGAAGAAGAAAAGGTTTGGTTGCACAGTGAAAGATTGGCATTGGGATTTGGTTTGATTAGCATTCCAAAAGGACTCATTATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCATGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGAGTTTGTAGTTAGAGACATCAACAGATTTCATCATTTCAAAAATGGTTGTTGTACTTGTAATGGTTTCTGGTAATTTCTTAGTAACATAGTGAATCATTGAAATCCCAAATCCAAATTTGTTGACAAAATCTTTCTGTTTTTTAACAACAAAAACTTGTAAATCACTGTAATTACTTGATGAATGAAGTTTAGT 1514 41.08 MAKSYMPMLRFLVMENAYGDDALKVFREFSSWSSEHPNPHMLASVISACASLGRLISGKVMHGAAVRLGSDSSNVVASVLVDMYAKCGNLEYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITFVGVLHACSHSGLPNEGLDYLTSMYEKYGIMPEIKHYTCVVDMLARAGQLDKAYELAKSMEVVSDDKALLWGALLSASRCHGRVDIAAEACKQLVNSNEQVAGAYVTLSNAYALAGDMEKAQRLRVEMKHTGVQKEPGCSWIEIKDSSYVFYAGEITSSPRGDEVLCLLRELDRKMNDRGYVRGSRGLAFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLIIRIMKNLRMCSDCHEAFKLISEIVEREFVVRDINRFHHFKNGCCTCNGFW 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 64539467 64541117 + XM_039019392.1 Bhi12g02081 53893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02081 415 Pfam DYW family of nucleic acid deaminases 330 415 IPR032867 GO:0008270
Bhi12g02081 415 SUPERFAMILY TPR-like 182 263 IPR011990 GO:0005515
Bhi12g02081 415 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 394 - -
Bhi12g02081 415 Gene3D Tetratricopeptide repeat domain 2 92 IPR011990 GO:0005515
Bhi12g02081 415 Pfam PPR repeat family 103 151 IPR002885 -
Bhi12g02081 415 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Bhi12g02081 415 PANTHER OS12G0163600 PROTEIN 16 394 - -
Bhi12g02081 415 TIGRFAM PPR: pentatricopeptide repeat domain 108 139 IPR002885 -
Bhi12g02081 415 Gene3D Tetratricopeptide repeat domain 102 319 IPR011990 GO:0005515
Bhi12g02081 415 Pfam E motif 224 285 IPR046848 -
Bhi12g02081 415 Pfam PPR repeat 78 100 IPR002885 -
Bhi12g02081 415 Pfam PPR repeat 178 203 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02081 - - - csv:101222645 727.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g02081 Bhi-Chr12:64539467 Bhi03g00979 Bhi-Chr3:19037168 2.32E-08 dispersed
Bhi12g02080 Bhi-Chr12:64539107 Bhi12g02081 Bhi-Chr12:64539467 1.38E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29