Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02236 TAAAAGAAAAAACGAAAAAAAAAAAGAAAAGAAAAAACCATTTCTCCCTTCCGTATTGGAGAGACGCCCCTTTAATCAAGTTCACAACCACCCCCTCTTCAATTTCCCTTCTTCCGCCTACGAAATCCCGCCGGCCGCTCTCCGATGACCGTCGCCGCCCTGTATTCCGTCTCTTTCCGGCCTTGATTGCAGGTTTTAGGGTGGAGCGCCGGCCGGTTCGTCCCTTTTTTGGGAATCTGCGGCAATGAGTGCCGGCACGGCGACCTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCACAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTACTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGAAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCTAAAGAACCGAGTGATGATGCTCAGGTTACCATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGTTGAACCAGACAACAATGTCACCAGTCCCAGAGATCAATACGATACAAATGGAGTGGATGGCCAAATGACGATATTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGTCATCTAAGGATTTGCAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCTTAAGTGGAACTGCTCCATGTCAGTCTCCACCATGTCTTTTGCAGGCTTCCAGTGACAGAGATGACTTTTTCCCTCCTAGTGCTACCTTCCATCGAAATGTGCACACAGAGAAGATGGTTGAGCACCCTCAGCAGCAGCAGCAGCATGCAAAGGGAACCAGTACGCGAGATTCTGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACGTATCCAATAAGAATTTAGGTCAGATTGTGACAAGTTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGGATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGAGTTCAACGTCGTTGATGGCATGCTACTTCATAAATCATCCTTGTGATTGACAAGAACTTGAGGGAGAAGAGGAGCAAAGTCGATAAATGGTTATCCGTTGCATGATTTGGCTGCGTGAAGGAGCGGTTATGTAGGCCTTCATGAAGCAGTCATATTTTGGAGATCTTGCGTGGGAGAGGTGTCTATATCCAAATGGTATGAGTATCTCACTCAAGCTGATCAATTTTGTAACTCGAACACGGTGTCGCAACCGATGCTAGGATGATTAGGAACTTGTTCATGTTTCTGCTGTCAAGGCTTATTGGGTTGAGATGATGATGATGCAATGTTGGAGACGTCCAGTTCTCATGCATCATGTATAAAAAAATGTATGCTATCTTTTCTGTCCCAAGACCCTCTCTCTTTCTGTGTATACCAGATTCATATTTGCAAGTGCTGAGCATCCAACCTCACATGACATAACCAATGCTTCTATTCAGTCATT 1667 46.01 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPVEPDNNVTSPRDQYDTNGVDGQMTIFYCGKVNVYDGVPPDKSSKDLQAWAIMHLAASPIHFPQNHPLSGTAPCQSPPCLLQASSDRDDFFPPSATFHRNVHTEKMVEHPQQQQQHAKGTSTRDSGLSSSSLEGYMNHQMRTHVSNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLGCFPVDLNVKDIQEC 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 71709043 71714068 + XM_039050771.1 Bhi12g02236 54048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02236 312 MobiDBLite consensus disorder prediction 227 253 - -
Bhi12g02236 312 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 3 232 IPR040390 -
Bhi12g02236 312 MobiDBLite consensus disorder prediction 109 138 - -
Bhi12g02236 312 Pfam tify domain 144 177 IPR010399 -
Bhi12g02236 312 PANTHER PROTEIN TIFY 4B-LIKE ISOFORM X1 3 232 - -
Bhi12g02236 312 SMART tify_2 138 179 IPR010399 -
Bhi12g02236 312 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Bhi12g02236 312 MobiDBLite consensus disorder prediction 233 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02236 - - - bhj:120092625 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi12g02236 Bhi-Chr12:71709043 Bhi12g02238 Bhi-Chr12:71709044 0 dispersed
Bhi12g02235 Bhi-Chr12:71709042 Bhi12g02236 Bhi-Chr12:71709043 0 tandem
Bhi12g02236 Bhi-Chr12:71709043 Bhi12g02237 Bhi-Chr12:71709043 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2730 PF06200 tify 3.30E-10 No_clan Bhi TF