Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02385 ATGGCAGAAATGAAGGCCATTCTATTGGGAATTCAACTTGCAAAATCGACGGGATTCTTCAAAGTAGTTGTTGAGTTAGACTGTCTGGAAGCTATTAATTTACTTACAAGGAAATCCTTTTCTCATTGTGCAGTTCAATGTTTGTTGGAGGAAATTTTATGTTATACTTCGAAATTTCTCCATGGTTTTAGTTTTGGGTTGTGTAAATTATTGTTTTTTAGTAAAAAAAAAAAAAAAACGGTGGATCGGCGACATGGCAAGCGGCCACTTCCTTGGGAAGCACCGGAGGAGAAAGAAATTAGGGATCAAAATGATGAAATTCCTTCTTCTTGGTCCCAATCTCACTTCAATTTCATACCACAAACACTAACTCAACCACCTCAATCGGCTCCTCTTCAAAGTCAAGAAACGTCGGAAAGTGGAAGGAAGCGACATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCAGAGATTCGTGATCCGAAGAAAGCAGCTAGAGTTTGGCTTGGCACTTTCGACACTGCCGAAGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGCAACAAAGCCAAACTTAATTTTCCTGAACGAGTTCAAGCCAACCCTGCTGAGTTTGGCTTTCTTCCTGCCACCACCGCCGGTGCTCCACCACCCTCAGCCGCCGTGCCGTCATATTCATCGCCGTCTGTTTCTCTTCCGCCGCCGTTGTCGCAGGAAGAAGCTTTTCCTGGCCTTCATCAGTACGCACAACTTCTCTCTAGCTCCGACGCTGATTTCCCTTATTATTCTTCTACTCTTCTTCTCAATCAACAACAACCCCATTACCCTTTTTCTTCTTCTTCTTCTTCTACTCGAGAACACCAACAAGATTATGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACAAATTAGACCATTATTATCAATTGTATGAGTTTTTATTCTCATAACTTTACGCATATATCCATTGCTTTCTATAAATCTATGCCTTATTTTCCATGATTTCTTCCTAATAATAATGATAATTATAAACCATATAATTCTCAA 1074 41.25 MAEMKAILLGIQLAKSTGFFKVVVELDCLEAINLLTRKSFSHCAVQCLLEEILCYTSKFLHGFSFGLCKLLFFSKKKKKTVDRRHGKRPLPWEAPEEKEIRDQNDEIPSSWSQSHFNFIPQTLTQPPQSAPLQSQETSESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGNKAKLNFPERVQANPAEFGFLPATTAGAPPPSAAVPSYSSPSVSLPPPLSQEEAFPGLHQYAQLLSSSDADFPYYSSTLLLNQQQPHYPFSSSSSSTREHQQDYDHYGKDFGTGGSTN 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 75383594 75394542 - XM_039019185.1 Bhi12g02385 54197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02385 312 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 131 291 - -
Bhi12g02385 312 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 CDD RNase_H_like 1 53 IPR044730 -
Bhi12g02385 312 CDD AP2 145 203 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 PANTHER DNA-BINDING DOMAIN 131 291 IPR044808 GO:0003700|GO:0009873
Bhi12g02385 312 SMART rav1_2 145 208 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 MobiDBLite consensus disorder prediction 280 312 - -
Bhi12g02385 312 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
Bhi12g02385 312 ProSiteProfiles AP2/ERF domain profile. 145 202 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 Pfam Reverse transcriptase-like 1 59 IPR002156 GO:0003676|GO:0004523
Bhi12g02385 312 MobiDBLite consensus disorder prediction 124 149 - -
Bhi12g02385 312 Pfam AP2 domain 145 194 IPR001471 GO:0003700|GO:0006355
Bhi12g02385 312 MobiDBLite consensus disorder prediction 223 243 - -
Bhi12g02385 312 Gene3D AP2/ERF domain 144 204 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02385 - - - bhj:120067644 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g02323 Bhi-Chr10:60310192 Bhi12g02385 Bhi-Chr12:75383594 3.87E-27 dispersed
Bhi10g02324 Bhi-Chr10:60310192 Bhi12g02385 Bhi-Chr12:75383594 3.76E-27 dispersed
Bhi12g02385 Bhi-Chr12:75383594 Bhi09g00274 Bhi-Chr9:5718487 3.74E-27 dispersed
Bhi12g02385 Bhi-Chr12:75383594 Bhi01g02838 Bhi-Chr1:70495580 9.13E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2743 PF13456 RVT_3 4.10E-07 CL0219 Bhi TF