Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi12g02419 GATCGCTGCTCACAATGGAGAAAAAAATCGTAATACCGAAAATACCCTTCTTGTTCGCTTCTTATACGATACTATTAGCCTTATCGAAGGAGCTGCTCTCCACTTCACTTTCCAGCACAAATCTCCATCCATGGCGGCTCCTTTCGCTACTTCGCCTCTGGTTGGCTTGGCTTCTGGTTCCAATACCGTCTCCCAAACCAAAGCTTCAGCTCCGTTTAATTCGGTTAACCTTCATAGGGTTCAGTCGCCGTCGAATCTTTCGTCCTCGTCGAGTTTTCTGTCCGGTTCGTTGCATTTTCCTTCTCTGACAACTTCTTTCAATCCGTTGTCTTCGAGAATTGCTGTTCGTAGCTCGGTCCGAGCTAGTGCTGAGGTACCACCTCTACAAGCGAAAGTAACAAATAAGGTATATTTCGATGTGAGCATTGGTAATCCAGTAGGCAAGCTTGCTGGGAGGATTGTGATTGGATTATTTGGGGATGATGTTCCCAAAACGGCAGAGAACTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGCCTTTCATCGTGTAATCAAGGATTTCATGATACAAGGGGGTGACTTTGACAAGGGCAATGGAACTGGGGGTAAAAGCATATATGGTCGTACATTTAAAGATGAAAACTTCAAATTGAGTCATACTGGACCAGGAGTTGTCAGCATGGCAAATGCAGGTCCAAATACTAATGGAAGTCAATTTTTCATATGCACTGTCAAGACGCCATGGTTGGATCAGAGGCATGTGGTTTTTGGGCAAGTCCTGGAAGGGTTCGACATAGTTAAGCTAATTGAGTCGCAAGAAACAGACCGTGGAGACCGACCATTGAAGAAAGTCGTCATCAGCGACTGTGGCGAGCTTCCGGTGGCCTAATTTTACCAATATCCAGATAACTGATCCTATCTTTGTTCTTCCTTTGGATTAGCTAATCTTAATTAATTTAAGTGGCCTTTCGTTGAGTCTTTTTGCTTGTAAAATCTATTGGTGGTGAAATTGAGCTCAGGAAGCGGGATTTTATTTGATGAATTTAGATGATGTTTGTGACAGCAACTATGCAAGTATATCGTCCACGAATCTGCCCCCACCGCTTTTTTTAAAGAGAAATAAAGAGGTCGCCTTAAAAACTATACTCTTCAAGGATCTGTGTTTTTCTCTAGTTTCTTGGTTGGGCATTTTCCCCCTTCATCCTGAGTAAATTATATTTGGTTTTGACATTGTAGAATTGATAATGTTTTCTATATGTAATTTGTATGTTGATTGAGGAACTTTAATGGGCGATGTGTTATGTGTTTTGTGTCTGTCTTTGTCTTGTCCGTGTGTGAATGTAAAGATTCTGTCGGTGTATTTATTCGACATGTCGTTATTACCCAATCATTGTCAATTTCAAA 1422 41.91 MAAPFATSPLVGLASGSNTVSQTKASAPFNSVNLHRVQSPSNLSSSSSFLSGSLHFPSLTTSFNPLSSRIAVRSSVRASAEVPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGFDIVKLIESQETDRGDRPLKKVVISDCGELPVA 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 76329313 76335403 + XM_039020007.1 Bhi12g02419 54231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi12g02419 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755|GO:0006457
Bhi12g02419 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 37 255 - -
Bhi12g02419 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 107 253 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413|GO:0003755
Bhi12g02419 258 Gene3D - 79 258 IPR029000 -
Bhi12g02419 258 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 37 255 - -
Bhi12g02419 258 SUPERFAMILY Cyclophilin-like 83 255 IPR029000 -
Bhi12g02419 258 CDD cyclophilin_ABH_like 92 253 - -
Bhi12g02419 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 104 254 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi12g02419 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - csv:101218923 427.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01849 Bhi-Chr6:51888734 Bhi12g02419 Bhi-Chr12:76329313 2.24E-24 dispersed
Bhi11g02339 Bhi-Chr11:63582237 Bhi12g02419 Bhi-Chr12:76329313 1.08E-37 dispersed
Bhi12g01036 Bhi-Chr12:31608945 Bhi12g02419 Bhi-Chr12:76329313 4.21E-88 dispersed
Bhi12g02419 Bhi-Chr12:76329313 Bhi05g01743 Bhi-Chr5:56018753 1.43E-72 dispersed
Bhi12g02419 Bhi-Chr12:76329313 Bhi10g00818 Bhi-Chr10:16552851 1.86E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33